Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2444

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2443: 10811 - HMMPfam-Peroxidase-PF00141,PRINTS-Haem peroxidase superfamily signature-PR00458,PRINTS-Plant ascorbate peroxidase signature-PR00459,ProSitePatterns-Peroxidases proximal heme-ligand signature.-PS00435,ProSitePatterns-Peroxidases active site signature.-PS00436,ProSiteProfiles-Plant heme peroxidase family profile.-PS50873,SUPERFAMILY--SSF48113, at 143347 to 145508 10811 mRNA_2444: 10812 - KOG4505 Na+/H+ antiporter, at 145860 to 150269 10812

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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145,043 - 10811 mRNA_2443 0.78 -0.4
145,046 + 10811 mRNA_2443 0.79 0.5
145,602 - -1.1
145,618 - 0.1
145,621 - 0.1
145,623 + 1.2
145,625 - -0.1
145,625 + 0.8
145,637 - 1.0
145,639 - -0.1
145,643 - 1.1
145,652 + -0.1
145,658 - 1.3
145,669 - 1.8
145,671 - 0.2
145,678 + -0.3
145,704 + 0.7
145,792 + 0.1
145,800 - 0.4
145,821 + 0.6
145,949 + 0.8
146,110 + -2.3
146,252 - -0.3
146,695 - 10812 mRNA_2444 0.19 2.2
146,703 + 10812 mRNA_2444 0.19 -0.4
146,990 + 10812 mRNA_2444 0.26 -0.4
147,406 - 10812 mRNA_2444 0.35 0.6
147,437 + 10812 mRNA_2444 0.36 0.8
147,553 + 10812 mRNA_2444 0.38 1.0
148,576 + 10812 mRNA_2444 0.62 -0.2
148,845 + 10812 mRNA_2444 0.68 1.5
149,330 - 10812 mRNA_2444 0.79 0.5
149,651 - 10812 mRNA_2444 0.86 -0.1
150,112 - 2.4
150,113 - -1.8
150,237 - -0.1
150,369 + 1.1
150,404 - -1.9
150,411 + -0.1
150,419 + -1.8
150,421 + -0.8
150,432 + -0.1
150,546 - 4.1
150,574 + 0.8
150,574 + 0.4
150,581 - 1.0
150,608 + 0.7
150,742 + -0.3
150,885 + 2.6