Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2442

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2441: 10809 - KOG1284 Bifunctional GTP cyclohydrolase II/3,4-dihydroxy-2butanone-4-phosphate synthase, at 138011 to 140441 10809 mRNA_2442: 10810 - HMMPfam-ACT domain-PF13840,SUPERFAMILY--SSF55021, at 140857 to 142808 10810 mRNA_2443: 10811 - HMMPfam-Peroxidase-PF00141,PRINTS-Haem peroxidase superfamily signature-PR00458,PRINTS-Plant ascorbate peroxidase signature-PR00459,ProSitePatterns-Peroxidases proximal heme-ligand signature.-PS00435,ProSitePatterns-Peroxidases active site signature.-PS00436,ProSiteProfiles-Plant heme peroxidase family profile.-PS50873,SUPERFAMILY--SSF48113, at 143347 to 145508 10811

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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140,039 - 10809 mRNA_2441 0.83 0.6
140,190 - 10809 mRNA_2441 0.90 0.5
140,214 + 0.4
140,317 - 0.7
140,389 + 0.8
140,551 - -0.3
140,556 + -1.8
140,584 - -0.8
140,625 - -1.2
140,659 - 1.0
140,659 + -0.3
140,663 + -2.5
140,664 + -0.4
140,670 - 0.9
140,679 - 0.1
140,697 + 0.2
140,729 - 1.0
140,729 - -0.1
140,729 - 0.0
140,730 - 2.1
140,735 - 3.3
140,752 + -2.7
140,752 - -0.9
140,781 - 2.1
140,787 + 0.5
140,827 - 0.6
140,955 - 0.1
141,013 + 0.2
141,694 - 10810 mRNA_2442 0.43 0.3
142,122 + 10810 mRNA_2442 0.65 -0.5
142,244 - 10810 mRNA_2442 0.71 0.9
142,246 + 10810 mRNA_2442 0.71 -0.2
142,425 - 10810 mRNA_2442 0.80 0.3
142,500 + 10810 mRNA_2442 0.84 -0.8
142,504 - 10810 mRNA_2442 0.84 0.2
142,670 - 1.5
142,680 + 0.1
142,802 - 2.3
142,810 - 0.3
142,819 + 0.1
142,825 + 0.4
142,832 + 1.7
142,847 + -0.1
142,926 + 0.7
143,001 - 0.1
143,140 - 1.3
143,140 + 0.3
143,140 - 0.1
143,140 - 0.2
143,144 - 2.2
143,146 + -0.9
143,147 + 0.5
143,150 + 0.3
143,151 - 2.6
143,164 - -2.3
143,167 + 0.4
143,266 + 1.4
143,279 + 0.8
143,284 - 0.2
143,294 + -0.7
143,299 - -0.5
143,302 + 0.2
143,413 - -0.3
143,440 + 0.5
143,578 + 10811 mRNA_2443 0.11 -0.2
143,578 + 10811 mRNA_2443 0.11 -0.5
143,597 - 10811 mRNA_2443 0.12 0.0
143,755 - 10811 mRNA_2443 0.19 -0.5
143,762 + 10811 mRNA_2443 0.19 -0.9