Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2435

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2434: 10802 - HMMPfam-ATP synthase subunit H-PF05493, at 119507 to 119841 10802 mRNA_2435: 10803 - Hypothetical Protein, at 120809 to 121330 10803 mRNA_2436: 10804 - KOG0254 Predicted transporter (major facilitator superfamily), at 121607 to 125074 10804

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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119,955 - -1.4
119,976 + -0.6
120,100 - 0.4
120,135 + -0.1
120,258 - 0.1
120,274 + 0.6
120,398 + 1.7
120,577 + 0.1
120,683 - 1.3
120,725 + -0.3
120,811 - 0.7
120,819 - 1.1
120,841 + 1.1
120,896 - 10803 mRNA_2435 0.17 -0.3
120,918 - 10803 mRNA_2435 0.21 0.1
120,920 + 10803 mRNA_2435 0.21 -2.0
120,921 + 10803 mRNA_2435 0.21 0.1
120,925 - 10803 mRNA_2435 0.22 -0.2
120,929 - 10803 mRNA_2435 0.23 1.4
120,933 + 10803 mRNA_2435 0.24 0.4
120,980 - 10803 mRNA_2435 0.33 1.2
120,980 + 10803 mRNA_2435 0.33 0.3
120,981 - 10803 mRNA_2435 0.33 -1.2
120,982 + 10803 mRNA_2435 0.33 0.8
120,983 - 10803 mRNA_2435 0.33 -0.5
120,983 + 10803 mRNA_2435 0.33 1.5
121,183 - 10803 mRNA_2435 0.72 -1.5
121,190 + 10803 mRNA_2435 0.73 -0.6
121,228 + 10803 mRNA_2435 0.80 0.7
121,234 + 10803 mRNA_2435 0.81 1.4
121,242 + 10803 mRNA_2435 0.83 -0.2
121,247 - 10803 mRNA_2435 0.84 0.3
121,256 + 10803 mRNA_2435 0.86 0.4
121,257 + 10803 mRNA_2435 0.86 2.1
121,261 + 10803 mRNA_2435 0.87 -1.4
121,270 - 10803 mRNA_2435 0.88 0.8
121,276 + 10803 mRNA_2435 0.89 0.7
121,283 - 0.8
121,287 + -0.6
121,306 + 1.2
121,308 + -0.1
121,338 + 0.1
121,340 - 0.9
121,362 - -0.2
121,401 - -0.5
121,416 + -1.7
121,416 + -0.1
121,417 - 1.2
121,461 + -0.3
121,462 + 0.7
121,462 - -0.2
121,497 + 0.8
121,516 + 0.1
121,522 - 1.3
121,538 - 0.3
121,558 - 0.1
121,560 - -0.3
121,562 + -0.5
121,605 - 0.8
121,606 + -3.1
121,608 + 0.5
121,615 - 0.3
121,620 + -0.4
121,708 - -0.1
121,725 - 0.6
121,727 + -0.3
121,739 - 1.6
121,742 + -1.0
122,306 - 10804 mRNA_2436 0.20 -0.2