Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2433

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2432: 10800 - K20028 ZDHHC2_15_20 palmitoyltransferase ZDHHC2/15/20, at 111348 to 112998 10800 mRNA_2433: 10801 - K10866 RAD50 DNA repair protein RAD50, at 113156 to 118783 10801 mRNA_2434: 10802 - HMMPfam-ATP synthase subunit H-PF05493, at 119507 to 119841 10802

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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112,458 - 10800 mRNA_2432 0.67 -0.3
112,605 + 10800 mRNA_2432 0.76 -0.5
113,013 - 0.4
113,893 - 10801 mRNA_2433 0.13 -2.9
114,507 + 10801 mRNA_2433 0.24 0.2
115,541 + 10801 mRNA_2433 0.42 0.0
116,530 - 10801 mRNA_2433 0.60 0.2
118,761 + -0.3
118,946 - 1.1
119,068 + -0.4
119,094 + 1.5
119,104 + 1.9
119,120 + -0.8
119,226 + -0.0
119,388 - 1.2