Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2427

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2426: 10794 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 92965 to 95698 10794 mRNA_2427: 10795 - Hypothetical Protein, at 96248 to 96907 10795 mRNA_2428: 10796 - KOG0583 Serine/threonine protein kinase, at 96972 to 102025 10796

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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95,274 - 10794 mRNA_2426 0.84 -0.2
95,336 - 10794 mRNA_2426 0.87 0.2
95,671 - 2.0
95,787 - -0.8
95,806 + -1.8
95,828 + 0.4
95,971 - -1.6
95,971 + 1.7
96,107 + 1.6
96,148 - -0.3
96,152 - 1.3
96,247 - 2.7
96,267 - 1.3
96,272 + -0.6
96,278 + -1.2
96,280 - 2.3
96,286 - 0.2
96,299 - 2.3
96,308 - 2.9
96,317 - 10795 mRNA_2427 0.10 0.7
96,328 + 10795 mRNA_2427 0.12 -0.7
96,412 + 10795 mRNA_2427 0.25 -0.3
96,423 - 10795 mRNA_2427 0.27 1.4
96,453 + 10795 mRNA_2427 0.31 0.1
96,513 - 10795 mRNA_2427 0.40 0.1
96,535 + 10795 mRNA_2427 0.43 -0.9
96,543 - 10795 mRNA_2427 0.45 -0.7
96,547 - 10795 mRNA_2427 0.45 -0.2
96,548 + 10795 mRNA_2427 0.45 1.3
96,566 + 10795 mRNA_2427 0.48 0.6
96,575 + 10795 mRNA_2427 0.50 -0.0
96,583 - 10795 mRNA_2427 0.51 0.9
96,583 + 10795 mRNA_2427 0.51 -1.3
96,584 + 10795 mRNA_2427 0.51 0.2
96,586 + 10795 mRNA_2427 0.51 0.6
96,634 + 10795 mRNA_2427 0.58 1.5
96,691 - 10795 mRNA_2427 0.67 -0.5
96,705 + 10795 mRNA_2427 0.69 2.0
96,709 + 10795 mRNA_2427 0.70 1.0
96,809 + 10795 mRNA_2427 0.85 0.4
96,855 - -0.4
96,859 + 0.8
96,861 + -1.9
96,874 + 1.3
97,057 + 1.2
97,128 + 0.6
97,276 - -1.0
97,621 + 10796 mRNA_2428 0.13 1.4
97,711 + 10796 mRNA_2428 0.15 -0.2
97,769 - 10796 mRNA_2428 0.16 1.3
97,770 + 10796 mRNA_2428 0.16 0.3
97,849 - 10796 mRNA_2428 0.17 -0.9