Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2423

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2422: 10790 - KOG2342 Uncharacterized conserved protein, at 84636 to 85865 10790 mRNA_2423: 10791 - BLAST proteophosphoglycan ppg4 [Moesziomyces aphidis DSM 70..., at 86088 to 89055 10791 mRNA_2424: 10792 - KOG1605 TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation), at 89637 to 90963 10792

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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85,177 - 10790 mRNA_2422 0.44 1.7
85,193 + 10790 mRNA_2422 0.45 -0.2
85,195 - 10790 mRNA_2422 0.45 -0.5
85,601 - 10790 mRNA_2422 0.78 -0.1
85,909 - 0.1
86,028 + 1.1
86,072 - -0.3
86,164 - -1.8
86,236 - 0.4
86,239 - 0.8
86,338 - -0.1
86,378 + -1.1
86,519 - 10791 mRNA_2423 0.15 1.9
86,622 + 10791 mRNA_2423 0.18 -1.1
86,657 + 10791 mRNA_2423 0.19 -2.3
86,751 - 10791 mRNA_2423 0.22 1.6
86,885 - 10791 mRNA_2423 0.27 0.9
86,940 + 10791 mRNA_2423 0.29 -1.1
87,011 + 10791 mRNA_2423 0.31 2.3
87,232 - 10791 mRNA_2423 0.39 0.2
87,253 - 10791 mRNA_2423 0.39 -1.9
87,253 - 10791 mRNA_2423 0.39 2.3
87,259 + 10791 mRNA_2423 0.39 1.2
87,401 + 10791 mRNA_2423 0.44 0.4
87,502 - 10791 mRNA_2423 0.48 0.5
87,535 + 10791 mRNA_2423 0.49 -0.4
87,536 + 10791 mRNA_2423 0.49 -1.2
87,918 + 10791 mRNA_2423 0.62 1.9
87,937 - 10791 mRNA_2423 0.62 2.8
87,998 - 10791 mRNA_2423 0.64 0.8
88,071 + 10791 mRNA_2423 0.67 1.3
88,238 + 10791 mRNA_2423 0.72 -0.1
88,415 - 10791 mRNA_2423 0.78 -0.7
88,681 - 10791 mRNA_2423 0.87 0.1
88,830 + -1.8
88,997 - 0.2
89,118 - 0.1
89,132 - -3.2
89,162 - 1.4
89,172 + -0.7
89,173 + 0.9
89,183 + 0.9
89,429 + -0.2
89,593 + 0.9
89,614 - -0.5
90,049 - 10792 mRNA_2424 0.31 0.9