Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2419

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2418: 10786 - HMMPfam-Cellulase (glycosyl hydrolase family 5)-PF00150,SUPERFAMILY--SSF51445, at 77070 to 79296 10786 mRNA_2419: 10787 - HMMPfam-Domain of unknown function (DUF4385)-PF14328, at 79410 to 80151 10787 mRNA_2420: 10788 - KOG2618 Uncharacterized conserved protein, at 80430 to 82352 10788

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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78,411 - 10786 mRNA_2418 0.60 -0.3
78,849 + 10786 mRNA_2418 0.80 2.1
78,850 + 10786 mRNA_2418 0.80 -1.4
78,860 + 10786 mRNA_2418 0.80 2.4
78,861 - 10786 mRNA_2418 0.80 0.3
78,862 - 10786 mRNA_2418 0.80 0.1
78,869 + 10786 mRNA_2418 0.81 1.5
79,010 + 10786 mRNA_2418 0.87 -1.6
79,075 - -0.7
79,315 - -1.5
79,322 - 0.2
79,745 - 10787 mRNA_2419 0.45 0.1
79,768 + 10787 mRNA_2419 0.48 0.5
79,852 - 10787 mRNA_2419 0.60 1.8
80,030 - 10787 mRNA_2419 0.84 1.4
80,044 - 10787 mRNA_2419 0.85 0.2
80,321 + 0.7
80,325 - -0.4
80,334 - 0.2
80,346 + -1.0
80,349 - 0.9
80,481 - 1.8
80,485 - -0.3
80,663 + 10788 mRNA_2420 0.12 0.4
80,760 + 10788 mRNA_2420 0.17 1.3
80,781 - 10788 mRNA_2420 0.18 -2.3
80,918 + 10788 mRNA_2420 0.25 -2.9
81,041 - 10788 mRNA_2420 0.32 0.0
81,083 + 10788 mRNA_2420 0.34 -0.2