Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2404

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2403: 10771 - HMMPfam-Protein of unknown function (DUF2462)-PF09495, at 37174 to 37596 10771 mRNA_2404: 10772 - HMMPfam-Cellulase (glycosyl hydrolase family 5)-PF00150,SUPERFAMILY--SSF51445, at 37941 to 40154 10772

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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36,945 - 0.2
36,951 + -0.5
36,958 + -1.2
36,963 + -0.4
36,963 + 1.2
36,964 - -1.5
36,989 + 1.6
37,071 + -1.3
37,122 - 0.7
37,401 + 10771 mRNA_2403 0.54 0.3
37,579 + -0.5
37,802 + -1.2
37,808 - 0.1
37,860 - 1.4
37,863 + 1.5
37,864 + -0.2
37,983 + -2.0
38,036 + -1.1
38,291 + 10772 mRNA_2404 0.16 1.3
38,306 - 10772 mRNA_2404 0.16 2.7
38,454 - 10772 mRNA_2404 0.23 1.7
38,589 + 10772 mRNA_2404 0.29 2.1
38,733 - 10772 mRNA_2404 0.36 1.4
38,829 + 10772 mRNA_2404 0.40 -2.4
38,863 - 10772 mRNA_2404 0.42 -0.8
38,909 - 10772 mRNA_2404 0.44 0.3
38,992 + 10772 mRNA_2404 0.47 0.2
39,148 - 10772 mRNA_2404 0.55 0.3
39,393 + 10772 mRNA_2404 0.66 0.8
39,421 + 10772 mRNA_2404 0.67 0.2
39,688 - 10772 mRNA_2404 0.79 0.3
39,726 - 10772 mRNA_2404 0.81 1.1
39,808 - 10772 mRNA_2404 0.84 -1.9
39,812 - 10772 mRNA_2404 0.85 0.2
39,908 + 10772 mRNA_2404 0.89 0.6
39,991 + -0.2
40,067 - 1.4
40,139 - 3.9
40,281 - 1.1
40,456 + 0.6
40,475 + 1.3
40,614 - 0.2
40,741 - -2.1
40,754 - 0.3
40,765 + 1.2
40,767 - 1.1
40,782 - 1.0
40,786 + 0.8
40,807 - 1.5
40,813 + -1.0
40,815 + 0.7
40,883 - 0.2
40,913 - 0.5
40,962 + 0.4
41,050 + -1.3
41,087 - 0.7
41,090 + 0.7
41,108 + -1.6
41,128 + -0.6