Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2401

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2400: 10768 - Hypothetical Protein, at 29855 to 31003 10768 mRNA_2401: 10769 - HMMPfam-von Willebrand factor type A domain-PF13519,ProSiteProfiles-VWFA domain profile.-PS50234,SMART-von Willebrand factor (vWF) type A domain-SM00327,SUPERFAMILY--SSF53300, at 31394 to 33493 10769 mRNA_2402: 10770 - K07870 RHOT1, ARHT1 Ras homolog gene family, member T1, at 33666 to 36845 10770

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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30,460 + 10768 mRNA_2400 0.53 0.4
30,504 - 10768 mRNA_2400 0.56 -0.4
30,522 + 10768 mRNA_2400 0.58 1.4
30,534 - 10768 mRNA_2400 0.59 0.8
30,571 - 10768 mRNA_2400 0.62 -0.0
30,787 + 10768 mRNA_2400 0.81 0.6
31,081 - -0.1
31,109 + -0.6
31,115 - -0.0
31,115 - -0.7
31,115 - 0.9
31,124 + -2.2
31,290 - -0.4
31,419 + 0.4
31,495 - 0.1
31,495 + -1.0
31,529 + -0.2
31,530 - -1.7
31,570 - 1.1
31,576 - -0.0
31,576 + 1.2
31,691 + 10769 mRNA_2401 0.14 0.7
31,848 + 10769 mRNA_2401 0.22 -0.6
31,887 + 10769 mRNA_2401 0.23 -0.0
32,060 - 10769 mRNA_2401 0.32 -1.3
32,261 + 10769 mRNA_2401 0.41 -0.0
32,385 - 10769 mRNA_2401 0.47 -2.1
32,444 + 10769 mRNA_2401 0.50 -0.4
32,452 - 10769 mRNA_2401 0.50 -0.8
32,525 - 10769 mRNA_2401 0.54 3.3
32,654 - 10769 mRNA_2401 0.60 -0.3
32,695 - 10769 mRNA_2401 0.62 1.3
32,699 + 10769 mRNA_2401 0.62 -0.4
32,711 + 10769 mRNA_2401 0.63 1.2
32,731 - 10769 mRNA_2401 0.64 1.6
32,819 - 10769 mRNA_2401 0.68 0.2
32,834 - 10769 mRNA_2401 0.69 1.4
32,857 + 10769 mRNA_2401 0.70 0.1
33,000 - 10769 mRNA_2401 0.76 -0.0
33,005 - 10769 mRNA_2401 0.77 1.6
33,008 - 10769 mRNA_2401 0.77 0.4
33,143 - 10769 mRNA_2401 0.83 -0.2
33,153 + 10769 mRNA_2401 0.84 -1.2
33,278 + 10769 mRNA_2401 0.90 0.5
33,284 - 0.5
33,290 - -0.5
33,310 + 0.1
33,426 + 0.2
33,439 - 0.1
33,442 - 0.7
33,485 + -0.6
33,592 - 0.1
33,598 + -1.0
33,738 - -0.2
33,752 + 2.9
33,874 - -0.9
34,149 - 10770 mRNA_2402 0.15 2.2
34,180 - 10770 mRNA_2402 0.16 0.5
34,349 - 10770 mRNA_2402 0.21 -2.5
34,353 - 10770 mRNA_2402 0.22 -0.9
34,378 - 10770 mRNA_2402 0.22 -1.2