Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2347

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2346: 10714 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 675723 to 677238 10714 mRNA_2347: 10715 - K09207 KLF6_7 krueppel-like factor 6/7, at 677617 to 679955 10715

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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676,724 - 10714 mRNA_2346 0.66 1.9
676,836 - 10714 mRNA_2346 0.73 1.5
676,851 + 10714 mRNA_2346 0.74 -0.5
677,005 - 10714 mRNA_2346 0.85 2.1
677,034 - 10714 mRNA_2346 0.86 0.4
677,034 - 10714 mRNA_2346 0.86 0.9
677,312 - -0.0
677,322 - 0.7
677,333 + 0.6
677,341 + 2.5
677,365 + -0.3
677,485 - 0.1
677,499 - -0.4
677,655 - 0.4
677,830 + -0.5
678,398 - 10715 mRNA_2347 0.33 0.2
678,658 + 10715 mRNA_2347 0.45 -0.1
678,786 - 10715 mRNA_2347 0.50 0.2
679,059 - 10715 mRNA_2347 0.62 1.6
679,105 - 10715 mRNA_2347 0.64 -1.2
679,406 - 10715 mRNA_2347 0.76 0.7
679,407 + 10715 mRNA_2347 0.77 -0.9
679,681 + 10715 mRNA_2347 0.88 -0.7
679,685 - 10715 mRNA_2347 0.88 0.8
679,808 + 0.3
679,822 + 0.5
680,010 + 1.7
680,088 - 0.3
680,089 + -0.8
680,138 + -0.2
680,229 - 0.3
680,247 + -0.6
680,258 + 0.3
680,278 + 0.7
680,286 - -1.2
680,286 - 0.6
680,288 - 0.2
680,290 - 1.1
680,290 - 1.5
680,309 - 0.4
680,372 + -1.5
680,398 + -0.1
680,408 + 0.4
680,411 - 0.3
680,416 + 1.7
680,428 - -0.1
680,435 - -1.2
680,452 - 0.8
680,453 + -1.6
680,465 + -0.4
680,476 - 0.6
680,485 + 0.8
680,487 + 0.6
680,487 + -1.0
680,489 - -0.9
680,551 - 0.6
680,552 + -1.4
680,553 + 0.7
680,553 + 0.5
680,554 - 2.8
680,559 + -1.4
680,560 + 0.4
680,562 + 0.6
680,571 + -1.1
680,572 + -0.9
680,572 + 1.9
680,572 - -0.2
680,577 - -0.8
680,583 + 1.6
680,584 - 0.9
680,625 - -0.3
680,633 + 0.6
680,636 + 0.2
680,637 - 1.1
680,644 + -0.0
680,648 + 1.5
680,653 + 0.4
680,683 - -1.3
680,686 - 1.1
680,690 - -0.0
680,694 - 0.1
680,696 + -1.9
680,699 - 3.0
680,703 - 0.0
680,706 - 0.6
680,708 + 1.7
680,719 + 1.4
680,738 + 2.1
680,740 - 1.2
680,747 - 0.9
680,758 + -0.6
680,776 + -1.3
680,776 + -0.7
680,778 + 1.7
680,786 - 0.4
680,807 + 0.2
680,822 + -2.5
680,862 + 1.1
680,863 - 0.3
680,866 + 0.2
680,875 + 2.6
680,880 - 1.1
680,888 + 0.1
680,888 - 1.5
680,907 - 1.5
680,917 - 0.6
680,919 - 0.1
680,923 + 2.0
680,927 + -0.5
680,941 + 0.6
680,942 - 1.5
680,944 + 0.2
680,951 + 0.2
680,955 + 1.1