Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2337

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2336: 10704 - KOG0254 Predicted transporter (major facilitator superfamily), at 653967 to 656080 10704 mRNA_2337: 10705 - BLAST general substrate transporter [Wallemia mellicola..., at 656119 to 656520 10705 mRNA_2338: 10706 - K05545 DUS4 tRNA-dihydrouridine synthase 4, at 657491 to 659083 10706

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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655,397 - 10704 mRNA_2336 0.68 -0.9
655,696 + 10704 mRNA_2336 0.82 -0.1
655,989 + -0.3
656,032 - 2.6
656,275 + 10705 mRNA_2337 0.39 2.1
656,277 - 10705 mRNA_2337 0.39 -1.1
656,283 + 10705 mRNA_2337 0.41 -0.3
656,284 - 10705 mRNA_2337 0.41 0.6
656,373 - 10705 mRNA_2337 0.63 -2.3
656,417 - 10705 mRNA_2337 0.74 -3.3
656,417 - 10705 mRNA_2337 0.74 0.2
656,430 + 10705 mRNA_2337 0.77 0.2
656,430 - 10705 mRNA_2337 0.77 -2.1
656,441 + 10705 mRNA_2337 0.80 -0.1
656,474 + 10705 mRNA_2337 0.88 -1.7
656,589 + 1.2
656,589 - 1.2
656,591 - 2.1
656,606 + -0.5
656,612 + 1.6
656,626 + -0.0
656,629 - -0.5
656,629 + 0.3
656,637 - 1.7
656,663 + -1.4
656,672 + -0.4
656,672 - 1.7
656,679 - -0.7
656,682 + -1.8
656,688 + -1.3
656,724 + -0.4
656,742 + 1.5
656,755 - 0.2
656,778 - 2.6
656,791 - -1.7
656,816 - 1.2
656,816 - -0.0
656,832 + 0.5
656,856 - -1.7
656,890 - 0.5
656,899 - 1.9
656,901 - 1.3
656,921 - 2.7
656,923 - 1.3
656,923 - 2.0
656,925 - 0.3
656,930 - 0.6
656,945 + 0.1
656,960 + 0.4
656,960 - -0.2
656,961 + -0.3
656,978 + 0.6
656,978 - 0.2
656,980 - 0.2
656,987 - 1.4
656,990 + 1.4
656,992 - -0.1
656,997 - 0.6
657,029 - -0.2
657,039 + -0.6
657,067 - 0.4
657,077 + -0.1
657,085 + 1.6
657,088 - 0.2
657,123 - -0.0
657,132 + -0.3
657,157 + 1.5
657,164 + -0.5
657,165 - -0.5
657,174 - 0.4
657,175 + 1.3
657,183 + -0.0
657,191 - 2.5
657,204 + 1.0
657,216 - -3.1
657,227 + 0.2
657,234 - 0.4
657,243 - 1.5
657,244 - 0.6
657,246 - 0.3
657,257 + -0.3
657,260 - 0.4
657,265 + 0.9
657,270 - 0.8
657,284 + 0.8
657,292 + -0.0
657,292 + 0.4
657,299 + 1.8
657,308 + 0.2
657,318 + 2.6
657,324 + -1.2
657,325 - 0.4
657,335 + -0.6
657,335 - 0.0
657,421 - 2.2
657,438 - 0.9
657,451 - -0.1
657,463 + -0.8
657,463 + 2.4
657,467 + 0.3