Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2308

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2307: 10675 - HMMPfam-Mitochondrial ATPase inhibitor, IATP-PF04568,SUPERFAMILY--SSF64602, at 572291 to 573066 10675 mRNA_2308: 10676 - ProSiteProfiles-VWFA domain profile.-PS50234,SUPERFAMILY--SSF53300, at 573284 to 575347 10676 mRNA_2309: 10677 - K10703 PHS1, PAS2 very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase, at 575716 to 577026 10677

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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572,291 + 1.2
572,363 + 2.2
572,416 + 10675 mRNA_2307 0.16 3.3
572,417 + 10675 mRNA_2307 0.16 0.4
572,421 - 10675 mRNA_2307 0.17 -0.4
572,423 - 10675 mRNA_2307 0.17 1.8
572,431 - 10675 mRNA_2307 0.18 1.0
572,441 + 10675 mRNA_2307 0.19 -0.0
572,449 + 10675 mRNA_2307 0.20 0.3
572,469 + 10675 mRNA_2307 0.23 -2.1
572,666 - 10675 mRNA_2307 0.48 0.7
572,800 + 10675 mRNA_2307 0.66 -0.1
572,979 - 10675 mRNA_2307 0.89 -0.4
573,011 - 1.4
573,132 + 0.4
573,138 - 0.4
573,138 + -0.2
573,178 + 1.1
573,180 - 3.1
573,181 + -1.4
573,183 + 0.9
573,189 + 1.0
573,189 + -0.8
573,192 - 0.9
573,196 - 1.0
573,198 - 0.2
573,198 + 0.9
573,199 + -0.2
573,203 - 2.0
573,206 + 1.4
573,212 + -0.3
573,214 - -0.2
573,220 - 2.9
573,230 + 2.0
573,233 + -1.1
573,236 - -0.2
573,236 + 0.4
573,248 - 0.5
573,338 - 1.7
573,346 - -0.9
573,363 + 1.1
573,373 - -0.9
573,376 + -0.0
573,487 - 1.3
573,496 - 10676 mRNA_2308 0.10 3.1
573,501 - 10676 mRNA_2308 0.11 0.8
573,506 - 10676 mRNA_2308 0.11 1.2
573,519 + 10676 mRNA_2308 0.11 0.0
573,600 - 10676 mRNA_2308 0.15 1.8
573,665 - 10676 mRNA_2308 0.18 0.4
574,277 - 10676 mRNA_2308 0.48 2.1
574,332 - 10676 mRNA_2308 0.51 -0.2
574,350 - 10676 mRNA_2308 0.52 0.1
574,364 + 10676 mRNA_2308 0.52 1.1
574,653 - 10676 mRNA_2308 0.66 -0.1
575,206 + 1.2
575,327 - 0.5
575,368 - 0.4
575,619 + 0.3
575,652 + 1.9
575,789 - 1.0