Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2303

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2302: 10670 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 563015 to 564806 10670 mRNA_2303: 10671 - Hypothetical Protein, at 565712 to 566657 10671 mRNA_2304: 10672 - Hypothetical Protein, at 567046 to 568484 10672

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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564,716 + -0.3
564,717 + 0.4
564,725 + 0.2
564,763 - -1.0
564,862 + 1.1
564,863 + -1.1
564,867 + 1.1
564,870 + 1.4
564,875 - 0.6
564,886 - -1.8
564,892 + -1.4
564,982 + -0.7
564,987 - 3.0
564,989 + -0.7
564,996 - 1.1
564,997 + 0.3
564,998 - -0.2
565,002 + 1.5
565,009 + -1.0
565,109 - -0.9
565,134 + 0.4
565,136 + 0.5
565,162 + -0.4
565,181 + 0.9
565,188 - 2.8
565,194 + -0.4
565,194 + -0.9
565,207 + -1.6
565,223 + 1.7
565,315 + -0.4
565,316 + -0.3
565,327 - 1.0
565,333 - -0.8
565,339 + -1.6
565,360 - 0.8
565,377 - -0.8
565,388 + 0.0
565,390 - 0.2
565,391 + -0.1
565,395 - 2.0
565,405 + 0.1
565,408 + -0.2
565,416 - -0.0
565,416 + -0.1
565,427 - 0.8
565,432 - 0.8
565,433 + 0.5
565,456 + 0.7
565,561 - -1.6
565,601 + 0.2
566,216 + 10671 mRNA_2303 0.53 0.6
566,359 + 10671 mRNA_2303 0.68 0.7
566,486 - 10671 mRNA_2303 0.82 1.6
566,630 + 0.3
566,763 - -0.5
566,765 - 1.7
566,765 - 2.1
566,891 - 0.4
567,210 - 10672 mRNA_2304 0.11 1.6
567,228 - 10672 mRNA_2304 0.13 1.7
567,358 - 10672 mRNA_2304 0.22 1.3
567,513 + 10672 mRNA_2304 0.32 2.3
567,526 + 10672 mRNA_2304 0.33 -0.6