Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2301

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2299: 10667 - Hypothetical Protein, at 557055 to 559337 10667 mRNA_2300: 10668 - Hypothetical Protein, at 559511 to 559996 10668 mRNA_2301: 10669 - HMMPfam-Transmembrane amino acid transporter protein-PF01490, at 560287 to 562676 10669 mRNA_2302: 10670 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 563015 to 564806 10670

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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559,301 - -1.6
559,407 - 1.4
559,427 + 1.3
559,440 - 0.7
559,446 - -1.2
559,600 + 10668 mRNA_2300 0.18 2.3
559,618 + 10668 mRNA_2300 0.22 -1.7
559,637 + 10668 mRNA_2300 0.26 -0.2
559,743 + 10668 mRNA_2300 0.48 1.9
559,772 - 10668 mRNA_2300 0.54 -0.4
559,806 + 10668 mRNA_2300 0.61 -0.7
559,869 - 10668 mRNA_2300 0.74 0.2
559,885 - 10668 mRNA_2300 0.77 0.1
559,895 - 10668 mRNA_2300 0.79 -0.5
559,901 + 10668 mRNA_2300 0.80 0.2
559,931 + 10668 mRNA_2300 0.86 -2.5
559,936 + 10668 mRNA_2300 0.87 -0.0
559,936 + 10668 mRNA_2300 0.87 1.5
559,936 - 10668 mRNA_2300 0.87 -2.0
559,952 - 2.1
559,958 - -0.1
559,977 + 1.6
560,041 + 1.3
560,066 - 0.5
560,093 + 0.5
560,149 - 1.0
560,156 + 0.8
560,158 + 0.0
560,178 + -0.2
560,247 + -1.1
560,356 - 0.7
560,371 - -1.8
560,377 - 0.0
560,381 - -0.4
560,382 + -1.5
560,384 + 1.8
560,529 + 10669 mRNA_2301 0.10 -0.2
561,251 - 10669 mRNA_2301 0.40 -0.1
561,398 - 10669 mRNA_2301 0.46 1.4
562,138 - 10669 mRNA_2301 0.77 -0.8
562,584 - -0.2
562,611 + 0.2
562,742 - 0.0
562,890 - -0.3
563,057 + 3.0
563,061 - 2.9
563,175 - 2.1
563,531 + 10670 mRNA_2302 0.29 2.4