Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2292

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2291: 10659 - HMMPfam-von Willebrand factor type A domain-PF13519,ProSiteProfiles-VWFA domain profile.-PS50234,SUPERFAMILY--SSF53300, at 540927 to 542780 10659 mRNA_2292: 10660 - K01669 phrB deoxyribodipyrimidine photo-lyase, at 543301 to 545980 10660 mRNA_2293: 10661 - BLAST splicing arginine serine-rich 12 [Moesziomyces an..., at 546142 to 547358 10661

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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542,671 + -0.3
542,699 + -0.7
542,811 + -0.0
542,816 - 0.9
542,823 - -0.5
542,829 + 0.1
542,829 + -0.7
542,982 - 0.0
543,041 + -0.1
543,189 - -0.2
543,199 + -2.1
543,307 - -0.6
543,310 - 2.2
543,351 + -0.3
543,414 + 0.1
543,507 + 0.1
543,625 + 10660 mRNA_2292 0.12 1.6
543,667 + 10660 mRNA_2292 0.14 2.2
543,876 - 10660 mRNA_2292 0.21 1.0
543,907 + 10660 mRNA_2292 0.23 0.0
544,077 - 10660 mRNA_2292 0.29 0.8
544,219 + 10660 mRNA_2292 0.34 0.0
544,642 - 10660 mRNA_2292 0.50 -0.5
544,645 + 10660 mRNA_2292 0.50 -0.1
544,673 + 10660 mRNA_2292 0.51 1.1
544,778 - 10660 mRNA_2292 0.55 0.9
544,862 - 10660 mRNA_2292 0.58 -1.0
544,935 - 10660 mRNA_2292 0.61 3.5
546,205 + -0.1
546,286 + 10661 mRNA_2293 0.12 1.3
546,565 + 10661 mRNA_2293 0.35 0.3
546,599 - 10661 mRNA_2293 0.38 -1.0
546,853 + 10661 mRNA_2293 0.58 0.7