Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2281

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2280: 10648 - HMMPfam-B-block binding subunit of TFIIIC-PF04182, at 511379 to 518850 10648 mRNA_2281: 10649 - K12190 VPS36, EAP45 ESCRT-II complex subunit VPS36, at 519083 to 521393 10649 mRNA_2282: 10650 - HMMPfam-Conidiation protein 6-PF10346, at 522236 to 522967 10650

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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518,852 + 0.4
518,966 + -0.1
518,985 - 1.6
518,998 - 0.9
519,004 - 1.0
519,027 - -1.2
519,087 + 1.7
519,376 - 10649 mRNA_2281 0.13 0.7
520,061 + 10649 mRNA_2281 0.42 -1.4
520,370 + 10649 mRNA_2281 0.56 -0.3
521,269 + -0.6
521,291 + -0.6
521,326 + -2.7
521,403 - 0.1
521,410 + -0.5
521,561 - 0.5
521,564 - -0.1
521,567 - -0.6
521,568 + -0.3
521,568 + 1.1
521,569 - -0.9
521,569 + -1.1
521,603 - -0.4
521,621 - -1.6
521,627 - -0.2
521,643 + 0.2
521,655 - 0.4
521,657 + 0.2
521,701 + -1.0
521,703 - -0.8
521,713 + 1.0
521,720 - 1.4
521,865 + -0.0
521,914 + 1.6
522,015 + -0.3
522,045 + 0.1