Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2277

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2276: 10644 - K02954 RP-S14, MRPS14, rpsN small subunit ribosomal protein S14, at 501721 to 502247 10644 mRNA_2277: 10645 - K13717 OTUD3 OTU domain-containing protein 3, at 502464 to 504545 10645 mRNA_2278: 10646 - KOG1118 Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation, at 504709 to 506668 10646

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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502,297 - 1.9
502,300 + -0.7
502,301 + 0.3
502,310 + -1.0
502,311 - 0.2
502,416 + -0.8
502,422 + -0.7
502,437 - -1.5
502,438 - 4.3
502,441 + -1.8
502,443 + 1.9
502,445 + 0.3
502,446 - 1.2
502,446 - -0.5
502,497 - 0.7
502,593 - 0.6
502,610 - -0.1
502,612 - 2.1
502,612 - -0.4
502,625 + 1.4
502,713 - 10645 mRNA_2277 0.12 2.3
502,731 - 10645 mRNA_2277 0.13 0.6
502,737 + 10645 mRNA_2277 0.13 -0.6
502,743 + 10645 mRNA_2277 0.13 -0.8
502,850 + 10645 mRNA_2277 0.19 0.3
503,364 + 10645 mRNA_2277 0.43 2.2
503,378 + 10645 mRNA_2277 0.44 -0.4
503,491 + 10645 mRNA_2277 0.49 0.7
503,623 + 10645 mRNA_2277 0.56 0.9
503,798 + 10645 mRNA_2277 0.64 -1.2
504,244 - 10645 mRNA_2277 0.85 0.8
504,535 - 1.8
504,809 - 2.6
504,920 + 10646 mRNA_2278 0.11 -0.7
505,202 - 10646 mRNA_2278 0.25 -1.5
505,524 + 10646 mRNA_2278 0.42 -1.2