Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2246

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2245: 10613 - K00134 GAPDH, gapA glyceraldehyde 3-phosphate dehydrogenase, at 455190 to 456884 10613 mRNA_2246: 10614 - K00026 MDH2 malate dehydrogenase, at 457247 to 458914 10614 mRNA_2247: 10615 - Hypothetical Protein, at 459109 to 460029 10615

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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456,870 - 0.1
456,985 - -0.1
457,022 - 1.4
457,023 - -0.0
457,055 + 1.2
457,062 + 0.5
457,192 - -0.5
457,279 + -1.4
457,307 + -1.1
457,335 - 0.9
457,975 + 10614 mRNA_2246 0.44 0.9
458,073 - 10614 mRNA_2246 0.50 0.0
458,203 - 10614 mRNA_2246 0.57 -0.1
458,210 + 10614 mRNA_2246 0.58 -0.8
458,365 + 10614 mRNA_2246 0.67 0.9
458,367 + 10614 mRNA_2246 0.67 0.5
458,495 + 10614 mRNA_2246 0.75 -0.4
458,638 - 10614 mRNA_2246 0.83 -0.2
458,654 + 10614 mRNA_2246 0.84 0.5
458,762 - 0.8
458,791 - 1.0
458,930 - 0.2
459,078 - 0.0
459,085 - 0.6
459,088 - 0.8
459,089 + -1.2
459,092 + -1.0
459,095 - 2.2
459,108 + -0.2
459,200 + 0.1
459,202 - 10615 mRNA_2247 0.10 -0.4
459,210 - 10615 mRNA_2247 0.11 -0.0
459,217 - 10615 mRNA_2247 0.12 -0.4
459,224 - 10615 mRNA_2247 0.12 0.0
459,233 + 10615 mRNA_2247 0.13 2.1
459,242 + 10615 mRNA_2247 0.14 0.6
459,251 + 10615 mRNA_2247 0.15 0.3
459,384 - 10615 mRNA_2247 0.30 0.5
459,392 - 10615 mRNA_2247 0.31 -0.7
459,401 - 10615 mRNA_2247 0.32 0.5
459,573 + 10615 mRNA_2247 0.50 1.8
459,708 - 10615 mRNA_2247 0.65 -1.7
459,723 + 10615 mRNA_2247 0.67 0.9
459,772 - 10615 mRNA_2247 0.72 -0.8