Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2238

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2237: 10605 - KOG1794 N-Acetylglucosamine kinase, at 435285 to 436613 10605 mRNA_2238: 10606 - K20813 TDG thymine-DNA glycosylase, at 436751 to 438235 10606 mRNA_2239: 10607 - K18163 NDUFAF6 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 6, at 438330 to 439601 10607

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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435,806 - 10605 mRNA_2237 0.39 0.3
435,972 - 10605 mRNA_2237 0.52 -0.5
435,980 - 10605 mRNA_2237 0.52 0.3
436,074 - 10605 mRNA_2237 0.59 1.6
436,264 + 10605 mRNA_2237 0.74 1.2
436,511 - 2.4
436,847 - 1.3
437,220 - 10606 mRNA_2238 0.32 1.3
437,269 + 10606 mRNA_2238 0.35 0.2
437,398 - 10606 mRNA_2238 0.44 1.0
437,705 - 10606 mRNA_2238 0.64 0.4
437,709 + 10606 mRNA_2238 0.65 -1.8
438,006 + 10606 mRNA_2238 0.85 1.3
438,138 - -2.7
438,154 - -0.5
438,168 + -0.7
438,171 + -0.1
438,273 - -0.8
438,289 + -0.8
438,294 - 2.6
438,319 - 0.5
438,334 + -0.2
438,440 - 2.4
438,449 - 0.9
438,450 - 1.2
438,464 + 10607 mRNA_2239 0.11 -0.6
438,596 + 10607 mRNA_2239 0.21 1.4
438,607 + 10607 mRNA_2239 0.22 0.5
438,873 - 10607 mRNA_2239 0.43 0.9
438,897 - 10607 mRNA_2239 0.45 0.8