Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2236

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2235: 10603 - K11843 USP14, UBP6 ubiquitin carboxyl-terminal hydrolase 14, at 430392 to 432550 10603 mRNA_2236: 10604 - KOG3098 Uncharacterized conserved protein, at 432656 to 434707 10604 mRNA_2237: 10605 - KOG1794 N-Acetylglucosamine kinase, at 435285 to 436613 10605

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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432,313 + 10603 mRNA_2235 0.89 1.7
432,792 - 1.8
432,861 + -0.5
433,025 - 10604 mRNA_2236 0.18 2.1
433,062 + 10604 mRNA_2236 0.20 0.3
433,586 - 10604 mRNA_2236 0.45 -0.7
433,736 - 10604 mRNA_2236 0.53 -0.1
433,738 + 10604 mRNA_2236 0.53 -0.6
433,858 + 10604 mRNA_2236 0.59 -0.4
434,165 - 10604 mRNA_2236 0.74 0.0
434,327 - 10604 mRNA_2236 0.81 0.9
434,454 - 10604 mRNA_2236 0.88 -1.1
434,463 + 10604 mRNA_2236 0.88 -1.7
434,577 - 0.3
434,581 - -1.4
434,653 + 2.5
434,718 + -0.9
434,739 + 2.0
434,746 - 0.3
434,757 + 0.1
434,774 + 1.7
434,775 + 0.1
434,777 + 0.6
434,798 + -1.2
434,800 - 0.2
434,808 + -1.0
434,821 + -1.0
434,822 + 1.2
434,831 + -0.2
434,838 - 1.5
434,846 - 0.9
434,850 - 0.3
434,851 + 1.9
434,863 - 0.4
434,867 - -2.0
434,871 + 0.6
434,873 + 1.8
434,874 - 1.1
434,875 - 0.1
434,877 + 0.8
434,883 - -1.0
434,886 - -0.2
434,893 - 0.7
434,898 - -1.6
434,900 - -1.4
434,902 + 0.0
434,904 - 0.6
434,910 - 1.0
434,915 + -0.4
434,921 + 0.5
434,924 - -0.2
434,925 + -0.3
434,929 - 0.4
434,929 + 2.1
434,934 - -0.2
434,935 - 0.6
434,935 + -0.5
434,936 - -0.5
434,938 - 0.3
434,942 - 1.2
434,943 - 1.6
434,947 + -0.3
434,950 - 0.5
434,953 - 1.5
434,966 + 0.4
434,989 - 0.3
434,998 - -3.0
435,070 - -0.8
435,080 + -0.2
435,095 - -1.1
435,098 - -0.7
435,407 + 3.6