Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2225

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2224: 10592 - KOG2653 6-phosphogluconate dehydrogenase, at 400569 to 403367 10592 mRNA_2225: 10593 - Hypothetical Protein, at 403974 to 404899 10593 mRNA_2226: 10594 - SMART-SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains-SM00717, at 405486 to 409218 10594

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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403,168 + -0.2
403,550 - -1.3
403,574 - -0.5
403,613 - -0.4
403,709 + -2.4
403,735 + 3.0
403,736 + 0.8
403,740 + 1.0
403,743 - 1.0
403,746 + -1.1
403,753 + 0.1
403,780 - -0.5
403,843 - -1.0
403,870 + 0.7
403,870 - 0.8
403,873 - -0.9
403,876 - -0.4
403,880 - 1.0
403,900 + -1.4
403,906 + -0.0
403,908 + -1.2
403,909 + 1.1
403,911 + 0.3
403,920 - 1.9
403,922 - -0.6
403,925 + 0.2
404,054 + 1.1
404,075 - 10593 mRNA_2225 0.11 0.1
404,088 + 10593 mRNA_2225 0.12 -0.1
404,093 + 10593 mRNA_2225 0.13 2.7
404,197 - 10593 mRNA_2225 0.24 0.1
404,221 + 10593 mRNA_2225 0.27 0.9
404,223 - 10593 mRNA_2225 0.27 2.0
404,223 - 10593 mRNA_2225 0.27 -0.4
404,339 - 10593 mRNA_2225 0.39 -1.0
404,370 - 10593 mRNA_2225 0.43 -2.8
404,381 - 10593 mRNA_2225 0.44 1.7
404,631 + 10593 mRNA_2225 0.71 0.3
404,634 - 10593 mRNA_2225 0.71 -1.4
404,671 + 10593 mRNA_2225 0.75 1.3
405,099 + 1.6
405,199 - 0.9
405,356 - 0.5
405,358 + 1.6
405,368 - -0.0
405,372 + 0.4
405,395 + 0.2
405,674 - 0.7
405,801 - -3.1