Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2217

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2216: 10584 - BLAST Oligosaccharide translocation protein RFT1 [Termitomy..., at 380175 to 381550 10584 mRNA_2217: 10585 - KOG2199 Signal transducing adaptor protein STAM/STAM2, at 382345 to 384541 10585 mRNA_2218: 10586 - SUPERFAMILY--SSF52047, at 384694 to 386223 10586

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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381,456 - -0.7
381,464 + -0.5
381,468 + -1.6
381,472 - 1.2
381,472 + -1.2
381,474 + 0.9
381,482 + -1.8
381,559 - -1.3
381,586 - -0.8
381,593 - 0.3
381,595 - 1.7
381,604 + -0.3
381,612 - 2.1
381,613 + -0.0
381,614 + 1.6
381,614 + -0.1
381,618 + 1.2
381,620 + 0.2
381,624 - 0.6
381,626 + 0.3
381,626 - 0.0
381,628 + 0.6
381,628 + 0.5
381,700 + 0.1
381,703 - 0.8
381,709 - 0.6
381,709 - 0.4
381,711 + 0.6
381,716 + 0.5
381,723 + -0.1
381,725 - -0.5
381,728 + 1.8
381,729 + -0.3
381,737 - 1.0
381,740 + 1.2
381,746 + 0.5
381,746 + 1.0
381,779 + -1.6
381,783 + -0.2
381,906 + 0.6
382,005 - -0.3
382,035 - 0.1
382,430 - 0.1
382,500 - -0.1
382,740 - 10585 mRNA_2217 0.18 2.0
383,287 + 10585 mRNA_2217 0.43 -0.4
383,742 - 10585 mRNA_2217 0.64 1.7
383,882 + 10585 mRNA_2217 0.70 0.6
383,904 - 10585 mRNA_2217 0.71 0.0
384,124 - 10585 mRNA_2217 0.81 -2.6
384,288 + 10585 mRNA_2217 0.88 0.7
384,459 + -0.2
384,511 + 1.2
385,121 + 10586 mRNA_2218 0.28 0.5
385,242 - 10586 mRNA_2218 0.36 -0.0
385,274 + 10586 mRNA_2218 0.38 0.2
385,428 - 10586 mRNA_2218 0.48 0.1
385,443 - 10586 mRNA_2218 0.49 -1.1