Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2213

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2212: 10580 - K04441 P38 p38 MAP kinase, at 371280 to 373458 10580 mRNA_2213: 10581 - Hypothetical Protein, at 373795 to 375886 10581 mRNA_2214: 10582 - K06970 rlmF 23S rRNA (adenine1618-N6)-methyltransferase, at 376563 to 378868 10582

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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373,437 + 0.1
373,484 - 0.1
373,486 - -1.6
373,903 + 0.9
374,188 + 10581 mRNA_2213 0.19 1.3
374,444 + 10581 mRNA_2213 0.31 1.6
374,591 - 10581 mRNA_2213 0.38 -0.6
374,617 - 10581 mRNA_2213 0.39 0.2
375,000 + 10581 mRNA_2213 0.58 -0.0
375,378 + 10581 mRNA_2213 0.76 1.6
375,619 - 10581 mRNA_2213 0.87 -0.3
375,628 + 10581 mRNA_2213 0.88 1.3
375,768 + 0.6
375,919 + -1.3
375,931 - 0.1
375,932 - -1.2
376,030 - 0.7
376,061 - 1.3
376,069 + -1.5
376,076 - -1.0
376,090 - -0.6
376,095 - 1.9
376,095 + 1.1
376,097 - 0.8
376,098 + -0.5
376,098 + 1.7
376,111 + -0.6
376,113 + 2.1
376,132 + 1.7
376,137 + 0.6
376,154 - -0.2
376,164 + -1.0
376,169 - 2.6
376,174 + -0.2
376,180 - 0.7
376,181 - 1.3
376,186 + -3.2
376,187 - -0.3
376,188 - 0.7
376,189 - 1.6
376,189 - -0.4
376,197 - 0.2
376,200 - 2.1
376,203 + 1.1
376,207 - 1.5
376,212 + 0.5
376,222 + 0.3
376,224 + 1.5
376,229 - -0.2
376,241 - -0.4
376,253 + 0.1
376,266 - -0.5
376,269 + 0.1
376,284 + 2.8
376,299 + 0.7
376,376 - 0.9
376,391 + -0.2
376,540 - 0.7
376,542 + -2.1
376,542 + 0.9
376,545 - -0.3
376,545 + -0.2
376,555 + -0.3