Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2206

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2205: 10573 - KOG0381 HMG box-containing protein, at 349439 to 350135 10573 mRNA_2206: 10574 - K20465 OSBPL9_10_11, ORP9_10_11 oxysterol-binding protein-related protein 9/10/11, at 350841 to 352829 10574 mRNA_2207: 10575 - K08284 MID1 calcium channel MID1, at 353107 to 355052 10575

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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350,216 - 1.9
350,352 - -0.6
350,362 + -0.2
350,378 - 0.4
350,381 - -0.4
350,394 + -0.4
350,395 + 0.8
350,395 - -0.4
350,415 + -0.4
350,426 - 0.2
350,433 - -0.6
350,518 - 4.4
350,521 + 1.6
350,524 - 1.8
350,536 - 1.0
350,539 - -0.8
350,540 - -2.6
350,541 + 0.7
350,543 - -0.1
350,547 + 2.3
350,548 - 0.5
350,549 - 0.1
350,555 - -0.3
350,555 + -0.5
350,556 + 0.9
350,556 - 0.4
350,560 - -0.4
350,561 + 0.0
350,565 - -0.7
350,568 - 1.9
350,572 - 0.7
350,572 - 0.3
350,573 + 0.3
350,576 - 0.2
350,578 - 2.7
350,578 - 1.6
350,580 - 0.6
350,581 + 0.5
350,584 - -0.3
350,587 + 1.0
350,587 + 1.3
350,587 + 0.5
350,587 + -0.5
350,587 + -0.2
350,587 + 1.8
350,590 + 2.0
350,594 - 2.1
350,759 - -0.7
350,764 + 0.0
350,767 - -0.1
350,771 - 0.0
350,772 - 0.3
350,794 - -0.6
350,796 - -1.2
350,799 + -0.7
350,802 + 0.3
350,804 - 2.5
350,926 - 0.7
350,928 - 1.1
350,938 - 1.2
350,946 + -0.5
350,946 - 1.0
350,952 - -0.3
350,965 - -0.4
350,967 - 1.1
351,085 - 10574 mRNA_2206 0.12 0.2
351,087 - 10574 mRNA_2206 0.12 -0.3
351,106 - 10574 mRNA_2206 0.13 0.4
351,235 + 10574 mRNA_2206 0.20 -0.1
351,261 - 10574 mRNA_2206 0.21 0.9
351,396 - 10574 mRNA_2206 0.28 3.9
351,678 + 10574 mRNA_2206 0.42 -1.1
352,263 - 10574 mRNA_2206 0.71 0.1
352,284 + 10574 mRNA_2206 0.73 1.3
352,440 + 10574 mRNA_2206 0.80 0.8
352,565 - 10574 mRNA_2206 0.87 1.0
352,566 + 10574 mRNA_2206 0.87 1.4
352,571 + 10574 mRNA_2206 0.87 1.8
352,818 + 0.1
352,851 + 1.3
353,002 + -0.4
353,002 + 1.1
353,025 - 1.5
353,037 - -0.4
353,046 + 0.1
353,065 + 0.3
353,325 + 10575 mRNA_2207 0.11 0.3
353,328 + 10575 mRNA_2207 0.11 -1.6
353,346 - 10575 mRNA_2207 0.12 0.4
353,599 - 10575 mRNA_2207 0.25 0.4
353,755 + 10575 mRNA_2207 0.33 -0.9
353,755 - 10575 mRNA_2207 0.33 1.8