Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2190

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2190: 10558 - K00059 fabG 3-oxoacyl-[acyl-carrier protein] reductase, at 301262 to 303174 10558 mRNA_2191: 10559 - ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048, at 304016 to 306697 10559

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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300,332 + 0.7
300,339 - -0.1
300,352 + 1.6
300,356 + -2.1
300,359 - 1.5
300,397 + -0.3
300,503 - 0.5
300,506 - -0.3
300,543 - 0.3
300,619 - 0.9
300,674 + 1.7
300,680 + 0.7
300,688 + 0.1
300,690 + -0.2
300,840 + -1.0
300,963 - 0.6
300,978 - 1.7
300,978 - 2.0
300,979 - 1.7
300,989 + -1.0
300,991 + 2.9
301,144 + 1.0
301,145 - 1.6
301,151 - 0.4
301,155 + 0.0
301,162 - 1.5
301,164 + 1.4
301,168 + 0.9
301,169 + 1.0
301,170 + -0.7
301,177 + 1.0
301,188 - -0.1
301,316 - 1.5
301,316 - -0.4
301,375 + 0.1
301,419 - -1.2
301,476 - 10558 mRNA_2190 0.11 0.8
302,065 + 10558 mRNA_2190 0.42 2.0
302,172 - 10558 mRNA_2190 0.48 0.1
302,343 + 10558 mRNA_2190 0.57 1.4
302,345 - 10558 mRNA_2190 0.57 2.0
302,651 - 10558 mRNA_2190 0.73 0.2
302,688 + 10558 mRNA_2190 0.75 1.2
302,739 + 10558 mRNA_2190 0.77 1.5
302,799 - 10558 mRNA_2190 0.80 -0.5
302,800 + 10558 mRNA_2190 0.80 0.3
302,850 + 10558 mRNA_2190 0.83 0.9
302,879 - 10558 mRNA_2190 0.85 -2.3
303,371 - -2.2
303,387 + 0.6
303,532 - 1.5
303,691 - 0.3
303,692 - 0.4
303,822 + 0.3
303,955 - -0.4
304,101 + 0.3