Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2184

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2183: 10551 - K00059 fabG 3-oxoacyl-[acyl-carrier protein] reductase, at 284423 to 286019 10551 mRNA_2184: 10552 - Hypothetical Protein, at 286236 to 287917 10552 mRNA_2185: 10553 - HMMPfam-Copper fist DNA binding domain-PF00649,PRINTS-Copper fist domain signature-PR00617,ProSiteProfiles-Copper-fist DNA-binding domain profile.-PS50073,SMART-Copper-Fist-SM00412,SMART--SM01090,SUPERFAMILY--SSF57879, at 288686 to 288844 10553

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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285,280 + 10551 mRNA_2183 0.54 0.9
285,570 - 10551 mRNA_2183 0.72 -1.7
285,619 - 10551 mRNA_2183 0.75 -2.0
285,688 - 10551 mRNA_2183 0.79 -0.8
285,833 + 10551 mRNA_2183 0.88 1.0
285,853 - 10551 mRNA_2183 0.90 1.2
286,012 + 0.1
286,124 - -1.8
286,134 - -1.7
286,135 - 0.2
286,171 - -0.0
286,189 - -0.1
286,206 - -0.3
286,249 + 2.4
286,272 + 0.4
286,373 - -1.2
286,405 + 10552 mRNA_2184 0.10 0.2
286,697 + 10552 mRNA_2184 0.27 0.1
286,724 - 10552 mRNA_2184 0.29 -0.3
287,027 + 10552 mRNA_2184 0.47 2.0
287,331 - 10552 mRNA_2184 0.65 0.3
287,331 + 10552 mRNA_2184 0.65 -0.1
287,594 - 10552 mRNA_2184 0.81 0.6
288,160 - -0.8
288,421 + 0.5
288,477 - 0.4
288,484 + 0.5
288,546 + -0.7
288,557 - 0.3
288,561 - 0.7
288,568 + 1.9
288,591 + 0.4
288,622 + 0.4
288,626 - 0.0
288,632 + -1.1
288,640 + 0.4
288,652 + 1.1
288,669 + 2.1
288,716 - 10553 mRNA_2185 0.19 1.4
288,717 - 10553 mRNA_2185 0.19 1.0
288,733 + 10553 mRNA_2185 0.30 0.1
288,784 - 10553 mRNA_2185 0.62 0.3
288,883 - 0.6
288,891 + 0.8