Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2180

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2179: 10547 - K06681 LTE1 Gdp/GTP exchange factor required for growth at low temperatures, at 268224 to 273308 10547 mRNA_2180: 10548 - KOG0166 Karyopherin (importin) alpha, at 273943 to 276215 10548

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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273,226 - 1.6
273,232 - -0.1
273,263 - 1.2
273,374 - -0.1
273,402 + -0.4
273,529 - 0.9
273,531 - -0.4
273,542 + -0.6
273,560 + 0.8
273,565 - -1.0
273,566 + 0.0
273,846 + 0.1
274,173 - 10548 mRNA_2180 0.10 0.3
274,231 - 10548 mRNA_2180 0.13 0.6
274,389 - 10548 mRNA_2180 0.20 1.2
274,397 + 10548 mRNA_2180 0.20 1.8
274,558 + 10548 mRNA_2180 0.27 -0.9
274,563 - 10548 mRNA_2180 0.27 -0.0
274,982 - 10548 mRNA_2180 0.46 1.7
275,126 - 10548 mRNA_2180 0.52 0.6
275,178 - 10548 mRNA_2180 0.54 1.7
275,236 - 10548 mRNA_2180 0.57 0.7
275,410 + 10548 mRNA_2180 0.65 0.3
275,820 - 10548 mRNA_2180 0.83 0.1
276,122 - 2.5
276,272 - 2.8
276,289 + 1.6
276,316 - -1.0
276,330 - -0.2
276,456 - 2.1
276,881 - -2.1
276,899 + -0.4