Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2179

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2179: 10547 - K06681 LTE1 Gdp/GTP exchange factor required for growth at low temperatures, at 268224 to 273308 10547 mRNA_2180: 10548 - KOG0166 Karyopherin (importin) alpha, at 273943 to 276215 10548

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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267,372 - 1.9
267,514 - 0.0
267,523 + 0.8
267,642 - -0.5
267,682 + -0.2
267,714 + 0.4
267,777 + 1.7
267,957 - -2.1
267,965 - -0.3
267,970 + 0.2
267,973 - -0.1
267,976 + 2.7
267,990 + 1.5
268,073 - -1.0
268,307 + 0.4
268,399 - 2.0
268,421 + 1.7
268,684 - 0.4
268,766 - 10547 mRNA_2179 0.11 0.8
268,873 - 10547 mRNA_2179 0.13 2.5
268,922 + 10547 mRNA_2179 0.14 1.4
268,956 + 10547 mRNA_2179 0.14 -2.3
269,052 + 10547 mRNA_2179 0.16 -2.4
269,436 - 10547 mRNA_2179 0.24 1.1
269,682 - 10547 mRNA_2179 0.29 0.7
269,710 - 10547 mRNA_2179 0.29 -0.4
269,727 - 10547 mRNA_2179 0.30 -0.7
270,192 - 10547 mRNA_2179 0.39 1.0
270,345 + 10547 mRNA_2179 0.42 0.5
270,432 + 10547 mRNA_2179 0.43 1.6
271,142 - 10547 mRNA_2179 0.57 2.5
271,241 - 10547 mRNA_2179 0.59 0.9
271,242 + 10547 mRNA_2179 0.59 1.3
271,986 - 10547 mRNA_2179 0.74 -0.7
272,150 + 10547 mRNA_2179 0.77 1.2
272,414 + 10547 mRNA_2179 0.82 2.1
272,818 - 0.8
273,226 - 1.6
273,232 - -0.1
273,263 - 1.2
273,374 - -0.1
273,402 + -0.4
273,529 - 0.9
273,531 - -0.4
273,542 + -0.6
273,560 + 0.8
273,565 - -1.0
273,566 + 0.0
273,846 + 0.1
274,173 - 10548 mRNA_2180 0.10 0.3
274,231 - 10548 mRNA_2180 0.13 0.6