Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2161

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2160: 10528 - KOG1018 Cytosine deaminase FCY1 and related enzymes, at 219379 to 220731 10528 mRNA_2161: 10529 - K03458 TC.NCS2 nucleobase-cation symporter-2, NCS2 family, at 220965 to 223272 10529 mRNA_2162: 10530 - K15027 EIF2D translation initiation factor 2D, at 223612 to 225989 10530

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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220,164 + 10528 mRNA_2160 0.58 -0.8
220,241 + 10528 mRNA_2160 0.64 2.0
220,372 - 10528 mRNA_2160 0.73 0.4
220,400 + 10528 mRNA_2160 0.75 1.0
220,622 + -0.8
220,663 - 1.7
220,727 - 1.2
220,837 + -0.0
220,931 - 0.5
221,393 - 10529 mRNA_2161 0.19 3.7
221,698 - 10529 mRNA_2161 0.32 0.4
221,770 - 10529 mRNA_2161 0.35 0.9
221,834 + 10529 mRNA_2161 0.38 -1.9
221,997 + 10529 mRNA_2161 0.45 0.6
222,260 - 10529 mRNA_2161 0.56 2.2
222,414 + 10529 mRNA_2161 0.63 0.3
222,454 + 10529 mRNA_2161 0.65 1.4
222,870 - 10529 mRNA_2161 0.83 1.0
222,897 + 10529 mRNA_2161 0.84 -0.1
222,972 - 10529 mRNA_2161 0.87 1.6
223,126 + -0.2
223,293 - -1.9
223,306 - -0.4
223,702 - 1.2
223,888 - 10530 mRNA_2162 0.12 0.1
223,940 - 10530 mRNA_2162 0.14 0.8
224,138 + 10530 mRNA_2162 0.22 0.4