Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2151

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2150: 10518 - Hypothetical Protein, at 192227 to 192680 10518 mRNA_2151: 10519 - K03348 APC1 anaphase-promoting complex subunit 1, at 192914 to 199163 10519 mRNA_2152: 10520 - KOG2887 Membrane protein involved in ER to Golgi transport, at 199277 to 200467 10520

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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192,076 + 3.7
192,078 + 2.1
192,220 + 0.3
192,653 + 0.8
192,934 - -0.4
194,095 - 10519 mRNA_2151 0.19 -0.6
194,126 - 10519 mRNA_2151 0.19 -0.6
194,281 - 10519 mRNA_2151 0.22 0.7
194,397 + 10519 mRNA_2151 0.24 -1.6
194,592 + 10519 mRNA_2151 0.27 -1.7
194,681 + 10519 mRNA_2151 0.28 -0.5
194,803 - 10519 mRNA_2151 0.30 0.9
194,836 - 10519 mRNA_2151 0.31 -2.4
197,996 - 10519 mRNA_2151 0.81 0.1
198,918 + 0.1
199,186 + 1.9
199,189 - 0.5
199,296 + -0.6
199,620 + 10520 mRNA_2152 0.29 2.1
199,625 + 10520 mRNA_2152 0.29 -0.4
199,780 + 10520 mRNA_2152 0.42 0.3
199,793 - 10520 mRNA_2152 0.43 0.9
199,914 - 10520 mRNA_2152 0.53 0.8
200,040 - 10520 mRNA_2152 0.64 1.4
200,047 + 10520 mRNA_2152 0.65 2.1
200,049 + 10520 mRNA_2152 0.65 1.3