Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2148

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2147: 10515 - K01719 hemD, UROS uroporphyrinogen-III synthase, at 187353 to 188300 10515 mRNA_2148: 10516 - KOG2490 Predicted membrane protein, at 188421 to 191027 10516 mRNA_2149: 10517 - K12948 SPCS3, SPC3 signal peptidase complex subunit 3, at 191152 to 191850 10517

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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188,309 + -0.1
188,392 + -0.6
188,393 + -0.4
188,675 + 2.6
189,740 + 10516 mRNA_2148 0.51 -1.8
189,923 - 10516 mRNA_2148 0.58 -2.3
189,965 - 10516 mRNA_2148 0.59 0.1
189,986 - 10516 mRNA_2148 0.60 2.8
190,052 + 10516 mRNA_2148 0.63 0.4
190,282 - 10516 mRNA_2148 0.71 0.4
190,398 + 10516 mRNA_2148 0.76 -2.4
190,539 - 10516 mRNA_2148 0.81 -1.6
190,595 + 10516 mRNA_2148 0.83 -1.4
190,760 + 10516 mRNA_2148 0.90 -1.5
190,853 + -0.4
190,891 + -0.2
191,024 - 0.5
191,042 + -0.0
191,043 + 1.9
191,056 - -0.8
191,132 - -0.5
191,205 + 1.1