Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2142

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2142: 10510 - Hypothetical Protein, at 179044 to 180564 10510 mRNA_2143: 10511 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383, at 180912 to 181824 10511

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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178,189 + -1.2
178,428 - -0.1
178,468 - 1.9
178,518 - -0.9
178,934 + 0.9
178,936 - 2.2
179,026 + -0.4
179,027 - 0.9
179,150 - 2.0
179,150 - 0.3
179,342 + 10510 mRNA_2142 0.20 -0.7
179,344 - 10510 mRNA_2142 0.20 0.4
179,373 - 10510 mRNA_2142 0.22 0.1
179,373 - 10510 mRNA_2142 0.22 0.4
179,787 - 10510 mRNA_2142 0.49 -0.5
180,045 - 10510 mRNA_2142 0.66 -0.9
180,054 + 10510 mRNA_2142 0.66 0.6
180,093 + 10510 mRNA_2142 0.69 2.5
180,201 - 10510 mRNA_2142 0.76 1.0
180,327 - 10510 mRNA_2142 0.84 -0.7
180,932 + 0.7
180,977 - 2.8
180,981 - 0.6
181,178 - 10511 mRNA_2143 0.29 -0.6
181,179 - 10511 mRNA_2143 0.29 0.5
181,185 + 10511 mRNA_2143 0.30 0.1
181,197 - 10511 mRNA_2143 0.31 0.9
181,215 - 10511 mRNA_2143 0.33 -1.2
181,254 - 10511 mRNA_2143 0.37 0.0
181,309 + 10511 mRNA_2143 0.43 -1.3
181,315 + 10511 mRNA_2143 0.44 -0.5
181,323 + 10511 mRNA_2143 0.45 0.4
181,332 - 10511 mRNA_2143 0.46 -1.1
181,394 - 10511 mRNA_2143 0.53 1.7