Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2141

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2140: 10508 - HMMPfam-F-box domain-PF00646,HMMPfam-Domain of unknown function (DUF1708)-PF08101,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF48350,SUPERFAMILY--SSF81383, at 162925 to 174925 10508 mRNA_2141: 10509 - SUPERFAMILY--SSF52047, at 175857 to 177524 10509

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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174,874 + 0.8
175,184 + -0.0
175,216 - 1.5
175,301 + -0.2
175,342 + -0.8
175,351 + 1.5
175,444 - 1.2
175,477 + 0.2
175,477 - -0.4
175,498 + 1.7
175,499 + -1.7
175,609 + 0.6
175,617 - 1.3
175,629 - 0.6
175,639 + 1.2
175,771 - 0.4
175,791 - -0.7
175,921 + 0.2
176,070 + 10509 mRNA_2141 0.13 -0.0
176,218 - 10509 mRNA_2141 0.22 1.9
176,227 + 10509 mRNA_2141 0.22 3.1
176,359 + 10509 mRNA_2141 0.30 0.6
176,404 + 10509 mRNA_2141 0.33 1.1
176,475 + 10509 mRNA_2141 0.37 1.4
176,761 - 10509 mRNA_2141 0.54 1.4
176,941 - 10509 mRNA_2141 0.65 0.1
177,397 - -0.9
177,530 - 0.8
177,653 - -0.8
177,669 + 1.8
177,672 - -0.7
178,189 + -1.2
178,428 - -0.1
178,468 - 1.9
178,518 - -0.9