Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2135

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2134: 10502 - K10660 MARCH5 E3 ubiquitin-protein ligase MARCH5, at 148859 to 150709 10502 mRNA_2135: 10503 - KOG2922 Uncharacterized conserved protein, at 150841 to 152742 10503 mRNA_2136: 10504 - K01613 psd, PISD phosphatidylserine decarboxylase, at 153030 to 154707 10504

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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149,911 + 10502 mRNA_2134 0.57 0.9
149,913 - 10502 mRNA_2134 0.57 1.2
150,277 - 10502 mRNA_2134 0.77 1.5
150,622 + 0.4
150,623 + 0.6
150,712 + -0.9
150,725 + -0.2
150,752 + 0.6
150,774 + 0.5
150,861 - -1.1
150,896 - -0.6
150,941 + -0.3
151,043 - 10503 mRNA_2135 0.11 0.9
151,062 - 10503 mRNA_2135 0.12 -0.4
151,089 + 10503 mRNA_2135 0.13 0.3
151,197 + 10503 mRNA_2135 0.19 0.2
151,216 + 10503 mRNA_2135 0.20 0.9
151,245 - 10503 mRNA_2135 0.21 -0.3
151,478 - 10503 mRNA_2135 0.33 2.3
151,776 + 10503 mRNA_2135 0.49 -0.3
151,785 - 10503 mRNA_2135 0.50 0.2
151,881 + 10503 mRNA_2135 0.55 0.9
151,979 - 10503 mRNA_2135 0.60 0.6
152,197 + 10503 mRNA_2135 0.71 0.7
152,238 - 10503 mRNA_2135 0.73 0.8
152,282 + 10503 mRNA_2135 0.76 -2.3
152,360 - 10503 mRNA_2135 0.80 0.2
152,650 + -0.3
152,654 - 0.1
152,664 - -1.6
152,690 - -2.0
152,693 + 1.6
152,700 + -1.4
152,764 + -0.0
152,808 - 0.3
153,117 - -2.5
153,269 + 10504 mRNA_2136 0.14 0.3
153,307 - 10504 mRNA_2136 0.17 2.4
153,666 - 10504 mRNA_2136 0.38 0.7
153,673 - 10504 mRNA_2136 0.38 1.9
153,721 - 10504 mRNA_2136 0.41 0.3