Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2124

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2123: 10491 - HMMPfam-Rare lipoprotein A (RlpA)-like double-psi beta-barrel-PF03330,SUPERFAMILY--SSF50685, at 127215 to 128574 10491 mRNA_2124: 10492 - Hypothetical Protein, at 128635 to 129596 10492 mRNA_2125: 10493 - BLAST BA75_02480T0 [Komagataella pastoris], at 129988 to 130716 10493

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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127,696 - 10491 mRNA_2123 0.35 2.4
127,782 + 10491 mRNA_2123 0.42 2.7
127,865 - 10491 mRNA_2123 0.48 1.7
128,002 + 10491 mRNA_2123 0.58 -0.3
128,456 + 0.1
128,484 + 1.4
128,789 - 10492 mRNA_2124 0.16 0.4
128,874 - 10492 mRNA_2124 0.25 2.3
128,874 - 10492 mRNA_2124 0.25 -0.0
129,047 + 10492 mRNA_2124 0.43 0.1
129,074 - 10492 mRNA_2124 0.46 1.1
129,203 + 10492 mRNA_2124 0.59 0.5
129,230 + 10492 mRNA_2124 0.62 -1.4
129,798 - 0.1
129,827 + 0.7
130,067 - 10493 mRNA_2125 0.11 1.6
130,067 - 10493 mRNA_2125 0.11 -2.7
130,114 + 10493 mRNA_2125 0.17 1.5
130,133 + 10493 mRNA_2125 0.20 1.5
130,209 - 10493 mRNA_2125 0.30 -0.0
130,325 + 10493 mRNA_2125 0.46 0.8
130,366 - 10493 mRNA_2125 0.52 0.0
130,486 - 10493 mRNA_2125 0.68 -0.3