Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2117

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2116: 10484 - K01184 E3.2.1.15 polygalacturonase, at 110471 to 111882 10484 mRNA_2117: 10485 - Hypothetical Protein, at 112509 to 114471 10485 mRNA_2118: 10486 - KOG0254 Predicted transporter (major facilitator superfamily), at 114569 to 117029 10486

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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111,526 + 10484 mRNA_2116 0.75 0.1
111,572 - 10484 mRNA_2116 0.78 2.1
111,636 - 10484 mRNA_2116 0.83 -0.0
111,640 - 10484 mRNA_2116 0.83 0.3
111,649 - 10484 mRNA_2116 0.83 1.7
111,668 - 10484 mRNA_2116 0.85 0.0
111,691 + 10484 mRNA_2116 0.86 1.2
111,726 - 10484 mRNA_2116 0.89 4.0
111,809 - 0.3
112,069 - -0.3
112,087 + -0.8
112,128 - 0.4
112,305 + -0.0
112,306 - 0.9
112,380 - 0.8
112,382 + 0.8
112,384 - 3.2
112,410 - -0.4
112,414 + -0.0
112,435 - 0.8
112,529 - 0.2
112,543 - 0.5
112,649 - -0.8
112,676 - -0.6
112,696 - 0.1
112,954 - 10485 mRNA_2117 0.23 -0.6
113,039 + 10485 mRNA_2117 0.27 -0.4
113,114 + 10485 mRNA_2117 0.31 2.1
113,139 + 10485 mRNA_2117 0.32 -0.3
113,234 + 10485 mRNA_2117 0.37 1.4
114,004 + 10485 mRNA_2117 0.76 1.6
114,196 - 10485 mRNA_2117 0.86 -0.1
114,203 + 10485 mRNA_2117 0.86 0.1
114,206 - 10485 mRNA_2117 0.86 0.0
114,433 + 0.2
114,465 - 1.1
114,471 + -0.7
114,575 - -0.0
114,581 - 1.1
114,626 - 0.2
114,677 + 1.7
114,711 - 0.8
114,857 - 10486 mRNA_2118 0.12 0.6
114,893 + 10486 mRNA_2118 0.13 1.4
115,108 + 10486 mRNA_2118 0.22 3.1
115,414 + 10486 mRNA_2118 0.34 0.1
115,415 + 10486 mRNA_2118 0.34 0.6