Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2116

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2115: 10483 - BLAST integral membrane protein [Stemphylium lycopersici], at 107556 to 109708 10483 mRNA_2116: 10484 - K01184 E3.2.1.15 polygalacturonase, at 110471 to 111882 10484 mRNA_2117: 10485 - Hypothetical Protein, at 112509 to 114471 10485

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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109,492 - 10483 mRNA_2115 0.90 -1.3
109,611 + 1.2
109,760 + 0.8
109,901 - 1.0
109,911 - 0.0
109,911 - 0.9
109,974 + 0.2
110,172 + -1.1
110,241 - 1.4
110,480 + -0.5
110,580 + 0.5
110,676 + 10484 mRNA_2116 0.15 0.6
110,807 - 10484 mRNA_2116 0.24 0.6
111,030 - 10484 mRNA_2116 0.40 0.1
111,079 + 10484 mRNA_2116 0.43 -0.2
111,108 + 10484 mRNA_2116 0.45 1.7
111,129 + 10484 mRNA_2116 0.47 -1.1
111,129 - 10484 mRNA_2116 0.47 0.9
111,230 - 10484 mRNA_2116 0.54 0.4
111,256 - 10484 mRNA_2116 0.56 0.3
111,320 + 10484 mRNA_2116 0.60 1.2
111,361 - 10484 mRNA_2116 0.63 0.3
111,390 - 10484 mRNA_2116 0.65 -0.1
111,409 + 10484 mRNA_2116 0.66 -0.5
111,410 + 10484 mRNA_2116 0.67 1.7
111,526 + 10484 mRNA_2116 0.75 0.1
111,572 - 10484 mRNA_2116 0.78 2.1
111,636 - 10484 mRNA_2116 0.83 -0.0
111,640 - 10484 mRNA_2116 0.83 0.3
111,649 - 10484 mRNA_2116 0.83 1.7
111,668 - 10484 mRNA_2116 0.85 0.0
111,691 + 10484 mRNA_2116 0.86 1.2
111,726 - 10484 mRNA_2116 0.89 4.0
111,809 - 0.3
112,069 - -0.3
112,087 + -0.8
112,128 - 0.4
112,305 + -0.0
112,306 - 0.9
112,380 - 0.8
112,382 + 0.8
112,384 - 3.2
112,410 - -0.4
112,414 + -0.0
112,435 - 0.8
112,529 - 0.2
112,543 - 0.5
112,649 - -0.8
112,676 - -0.6
112,696 - 0.1