Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2114

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2114: 10482 - K10768 ALKBH6 alkylated DNA repair protein alkB homolog 6, at 105978 to 107393 10482 mRNA_2115: 10483 - BLAST integral membrane protein [Stemphylium lycopersici], at 107556 to 109708 10483

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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105,581 - -0.9
105,818 + 2.4
105,833 + -0.6
105,859 - 0.4
105,989 + 0.3
106,171 - 10482 mRNA_2114 0.14 2.4
106,224 - 10482 mRNA_2114 0.17 -1.3
106,233 + 10482 mRNA_2114 0.18 0.2
106,244 + 10482 mRNA_2114 0.19 1.4
106,437 - 10482 mRNA_2114 0.32 0.4
106,645 + 10482 mRNA_2114 0.47 -1.4
106,656 - 10482 mRNA_2114 0.48 0.3
106,725 + 10482 mRNA_2114 0.53 2.1
106,810 + 10482 mRNA_2114 0.59 0.4
106,969 + 10482 mRNA_2114 0.70 -0.4
106,972 + 10482 mRNA_2114 0.70 1.2
107,095 - 10482 mRNA_2114 0.79 0.2
107,103 - 10482 mRNA_2114 0.79 1.1
107,117 + 10482 mRNA_2114 0.80 -0.9
107,304 + -0.5
107,421 - 0.8
107,423 + 1.3
107,423 + 0.5
107,436 + -1.4
107,438 - -0.1
107,444 + -0.2
107,490 - 2.2
107,562 - 1.4
107,577 - 1.6
107,580 - -0.1
107,591 - 0.4
107,627 + -0.2
107,992 - 10483 mRNA_2115 0.20 2.8
108,029 + 10483 mRNA_2115 0.22 -1.8
108,040 + 10483 mRNA_2115 0.22 1.2
108,082 + 10483 mRNA_2115 0.24 3.6
108,157 - 10483 mRNA_2115 0.28 0.4
108,176 - 10483 mRNA_2115 0.29 1.0
108,208 - 10483 mRNA_2115 0.30 1.5
108,314 + 10483 mRNA_2115 0.35 0.1