Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2111

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2110: 10478 - K10277 KDM8, JMJD5 lysine-specific demethylase 8, at 99075 to 100834 10478 mRNA_2111: 10479 - K10575 UBE2G1, UBC7 ubiquitin-conjugating enzyme E2 G1, at 101300 to 102530 10479 mRNA_2112: 10480 - Hypothetical Protein, at 102652 to 103100 10480 mRNA_2113: 10481 - KOG0015 Regulator of arginine metabolism and related MADS box-containing transcription factors, at 103477 to 104004 10481

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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100,366 - 10478 mRNA_2110 0.73 2.6
100,579 - 10478 mRNA_2110 0.85 0.4
100,641 - 10478 mRNA_2110 0.89 1.2
101,102 - -0.3
101,113 - -0.9
101,113 - 1.2
101,138 + -0.0
101,141 - 3.0
101,242 - -0.2
101,262 + 0.9
102,137 + 10479 mRNA_2111 0.68 -1.8
102,406 - 10479 mRNA_2111 0.90 -1.3
102,563 - 0.0
102,645 - -1.5
102,702 - 10480 mRNA_2112 0.11 0.2
102,753 - 10480 mRNA_2112 0.22 0.9
102,828 - 10480 mRNA_2112 0.39 1.9
102,957 - 10480 mRNA_2112 0.68 1.2
102,996 - 10480 mRNA_2112 0.77 0.5
102,998 - 10480 mRNA_2112 0.77 1.6
103,015 + 10480 mRNA_2112 0.81 0.6
103,015 + 10480 mRNA_2112 0.81 0.7
103,024 - 10480 mRNA_2112 0.83 -0.1
103,028 + 10480 mRNA_2112 0.84 -2.3
103,052 - 10480 mRNA_2112 0.89 1.4
103,129 + 0.1
103,166 + 1.8
103,167 - 0.9
103,171 + -2.0
103,171 - -0.6
103,180 + -0.3
103,182 - 2.3
103,313 + 0.2
103,329 - -0.1
103,348 - 0.7
103,413 + 2.3
103,447 - -1.2
103,477 - 0.5