Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2106

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2105: 10473 - K17991 PXG peroxygenase, at 85042 to 86447 10473 mRNA_2106: 10474 - K15710 SHPRH E3 ubiquitin-protein ligase SHPRH, at 86774 to 93150 10474 mRNA_2107: 10475 - K01918 panC pantoate--beta-alanine ligase, at 93856 to 95198 10475

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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86,084 - 10473 mRNA_2105 0.74 -0.6
86,133 - 10473 mRNA_2105 0.78 0.7
86,249 - 10473 mRNA_2105 0.86 0.2
86,386 + 0.7
86,489 - 2.6
86,530 + 0.8
86,581 + -1.1
86,654 - -0.8
86,694 - -1.5
86,735 + 1.6
86,795 - -0.7
86,812 - -0.1
86,981 - 1.0
87,006 + 3.5
87,077 + 1.3
87,117 + 0.5
87,301 + -0.0
87,327 + 2.2
87,419 - 10474 mRNA_2106 0.10 0.4
87,432 - 10474 mRNA_2106 0.10 -0.9
87,435 + 10474 mRNA_2106 0.10 0.1
87,558 - 10474 mRNA_2106 0.12 -0.2
88,069 - 10474 mRNA_2106 0.20 -0.0
88,121 - 10474 mRNA_2106 0.21 1.5
88,146 - 10474 mRNA_2106 0.22 0.3
88,150 - 10474 mRNA_2106 0.22 -1.9
88,161 + 10474 mRNA_2106 0.22 -1.6
88,170 - 10474 mRNA_2106 0.22 1.3
88,263 + 10474 mRNA_2106 0.23 -0.8
88,372 + 10474 mRNA_2106 0.25 1.7
88,661 + 10474 mRNA_2106 0.30 1.1
89,306 - 10474 mRNA_2106 0.40 2.9
89,354 - 10474 mRNA_2106 0.40 -0.8
89,505 + 10474 mRNA_2106 0.43 0.8
89,534 - 10474 mRNA_2106 0.43 -0.1
89,544 + 10474 mRNA_2106 0.43 1.0
89,544 + 10474 mRNA_2106 0.43 2.0
89,603 + 10474 mRNA_2106 0.44 2.1
89,619 + 10474 mRNA_2106 0.45 -0.2
89,807 - 10474 mRNA_2106 0.48 1.9
90,128 - 10474 mRNA_2106 0.53 -0.2
90,263 - 10474 mRNA_2106 0.55 1.6
90,273 - 10474 mRNA_2106 0.55 0.1
90,285 + 10474 mRNA_2106 0.55 0.9
90,295 - 10474 mRNA_2106 0.55 1.3
90,419 + 10474 mRNA_2106 0.57 1.2
90,452 - 10474 mRNA_2106 0.58 -0.0
90,543 + 10474 mRNA_2106 0.59 1.9
90,816 - 10474 mRNA_2106 0.63 1.4
91,252 - 10474 mRNA_2106 0.70 0.6
91,566 + 10474 mRNA_2106 0.75 0.2
91,703 + 10474 mRNA_2106 0.77 0.4
91,732 - 10474 mRNA_2106 0.78 0.6
91,872 - 10474 mRNA_2106 0.80 -0.6
91,875 + 10474 mRNA_2106 0.80 -0.1
92,270 + 10474 mRNA_2106 0.86 1.2
92,299 - 10474 mRNA_2106 0.87 0.0
92,757 - 0.7
92,912 + -1.0
93,027 + 0.5
93,052 - 1.2
93,165 - 0.8
93,174 - 2.2
93,202 - -0.4
93,246 + 2.3
93,343 + -0.6
93,364 + -0.3
93,539 + 1.7
93,807 + 0.9
93,893 - 0.2
93,944 - -0.0
94,085 + 10475 mRNA_2107 0.17 3.5