Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2090

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2089: 10457 - KOG0637 Sucrose transporter and related proteins, at 45367 to 47923 10457 mRNA_2090: 10458 - K09104 K09104 bHLH factor, other, at 48252 to 49306 10458 mRNA_2091: 10459 - KOG0254 Predicted transporter (major facilitator superfamily), at 49502 to 51805 10459

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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47,449 - 10457 mRNA_2089 0.81 -0.5
47,683 - 2.5
47,847 + -2.1
48,118 - -2.0
48,127 - 0.7
48,127 + -0.1
48,133 - 2.6
48,133 - 0.9
48,163 - 2.8
48,165 - -0.6
48,172 + 0.3
48,183 - 0.4
48,234 + 2.3
48,265 + -0.7
48,461 + 10458 mRNA_2090 0.20 0.8
48,474 + 10458 mRNA_2090 0.21 -1.2
48,648 - 10458 mRNA_2090 0.38 0.9
49,170 + 10458 mRNA_2090 0.87 -0.2
49,320 + 0.8
49,459 - 0.6
49,499 + 0.4
49,512 + -0.9
49,576 + 1.9
49,649 - 0.3
49,948 - 10459 mRNA_2091 0.19 3.7
49,989 + 10459 mRNA_2091 0.21 0.3
50,196 + 10459 mRNA_2091 0.30 -0.8