Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2078

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2077: 10445 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 19100 to 20228 10445 mRNA_2078: 10446 - K10773 NTH endonuclease III, at 20466 to 22211 10446 mRNA_2079: 10447 - Hypothetical Protein, at 22579 to 23856 10447

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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19,482 - 10445 mRNA_2077 0.34 1.3
19,649 - 10445 mRNA_2077 0.49 0.3
19,663 + 10445 mRNA_2077 0.50 0.7
19,676 - 10445 mRNA_2077 0.51 0.5
19,761 + 10445 mRNA_2077 0.59 -0.2
19,762 + 10445 mRNA_2077 0.59 0.1
19,949 - 10445 mRNA_2077 0.75 0.0
20,094 - 10445 mRNA_2077 0.88 0.3
20,094 - 10445 mRNA_2077 0.88 1.1
20,100 + 10445 mRNA_2077 0.89 0.8
20,100 + 10445 mRNA_2077 0.89 0.1
20,306 + -0.1
20,419 + -1.7
20,794 - 10446 mRNA_2078 0.19 -0.2
20,866 - 10446 mRNA_2078 0.23 -0.6
21,016 - 10446 mRNA_2078 0.32 -0.6
21,051 + 10446 mRNA_2078 0.34 0.6
21,120 - 10446 mRNA_2078 0.37 -0.9
21,148 - 10446 mRNA_2078 0.39 -0.3
21,401 - 10446 mRNA_2078 0.54 -1.7
21,857 + 10446 mRNA_2078 0.80 1.6
21,860 + 10446 mRNA_2078 0.80 0.8
21,932 + 10446 mRNA_2078 0.84 1.9
22,332 + -0.4
22,338 - 2.8
22,341 + -0.0
22,342 - -0.2
22,348 + -2.3
22,349 + 2.2
22,353 + -0.4
22,358 + 0.4
22,366 - -0.2
22,486 + 0.6
22,490 + 0.1
22,512 - -0.3
22,530 + -0.2
22,589 + -0.0
22,777 - 10447 mRNA_2079 0.15 -0.1
22,817 - 10447 mRNA_2079 0.19 0.8
22,835 - 10447 mRNA_2079 0.20 1.5