Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2076

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2075: 10443 - ProSiteProfiles-VWFA domain profile.-PS50234,SUPERFAMILY--SSF53300, at 13225 to 14495 10443 mRNA_2076: 10444 - K15073 UFO1 ubiquitin ligase complex F-box protein UFO1, at 14987 to 18739 10444 mRNA_2077: 10445 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 19100 to 20228 10445

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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14,030 - 10443 mRNA_2075 0.63 0.4
14,320 - 10443 mRNA_2075 0.86 0.3
14,332 + 10443 mRNA_2075 0.87 0.2
14,454 - 1.6
14,626 - 3.0
14,757 - 0.5
14,811 - 1.7
14,867 + 0.2
15,085 + 0.8
15,241 + 1.8
15,370 - 10444 mRNA_2076 0.10 0.7
15,435 - 10444 mRNA_2076 0.12 -0.6
15,498 - 10444 mRNA_2076 0.14 -0.2
15,501 - 10444 mRNA_2076 0.14 -0.6
15,657 + 10444 mRNA_2076 0.18 -1.0
15,720 - 10444 mRNA_2076 0.20 -0.5
15,823 + 10444 mRNA_2076 0.22 3.4
15,936 - 10444 mRNA_2076 0.25 1.7
15,960 + 10444 mRNA_2076 0.26 -0.7
15,991 - 10444 mRNA_2076 0.27 2.2
16,098 + 10444 mRNA_2076 0.30 1.5
16,124 - 10444 mRNA_2076 0.30 0.9
16,137 - 10444 mRNA_2076 0.31 2.0
16,257 + 10444 mRNA_2076 0.34 0.4
16,265 + 10444 mRNA_2076 0.34 -1.1
16,389 - 10444 mRNA_2076 0.37 0.7
16,832 + 10444 mRNA_2076 0.49 0.7
17,032 + 10444 mRNA_2076 0.54 1.4
17,078 - 10444 mRNA_2076 0.56 1.7
17,214 + 10444 mRNA_2076 0.59 -0.7
17,248 - 10444 mRNA_2076 0.60 1.5
17,451 + 10444 mRNA_2076 0.66 1.7
17,453 - 10444 mRNA_2076 0.66 1.8
17,588 + 10444 mRNA_2076 0.69 0.5
17,738 + 10444 mRNA_2076 0.73 -0.5
17,760 - 10444 mRNA_2076 0.74 -0.9
17,808 + 10444 mRNA_2076 0.75 -0.4
17,870 + 10444 mRNA_2076 0.77 0.9
17,981 - 10444 mRNA_2076 0.80 2.3
18,033 + 10444 mRNA_2076 0.81 2.3
18,192 - 10444 mRNA_2076 0.85 1.8
18,548 + 0.4
18,639 + 1.7
18,742 - 1.6
18,860 + -0.6
18,863 - -0.1
18,878 - 1.6
19,094 + 1.0
19,127 - 2.6
19,187 - 0.1
19,313 - 10445 mRNA_2077 0.19 0.1
19,326 - 10445 mRNA_2077 0.20 -1.9
19,482 - 10445 mRNA_2077 0.34 1.3
19,649 - 10445 mRNA_2077 0.49 0.3
19,663 + 10445 mRNA_2077 0.50 0.7
19,676 - 10445 mRNA_2077 0.51 0.5