Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2065

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2064: 10432 - KOG3839 Lectin VIP36, involved in the transport of glycoproteins carrying high mannose-type glycans, at 863719 to 865833 10432 mRNA_2065: 10433 - Hypothetical Protein, at 866238 to 867408 10433 mRNA_2066: 10434 - SUPERFAMILY--SSF52047, at 867605 to 868583 10434

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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865,284 + 10432 mRNA_2064 0.74 0.8
865,304 - 10432 mRNA_2064 0.75 0.2
865,360 + 10432 mRNA_2064 0.78 3.1
865,451 - 10432 mRNA_2064 0.82 0.7
865,540 - 10432 mRNA_2064 0.86 0.4
865,547 - 10432 mRNA_2064 0.86 -0.3
865,563 + 10432 mRNA_2064 0.87 1.5
865,706 + 1.0
865,714 - -2.1
865,981 - -0.3
865,998 + 2.4
866,001 - -1.1
866,019 - 2.0
866,024 + 1.2
866,141 - 1.5
866,147 - 1.4
866,174 - -0.5
866,175 - 1.9
866,416 + 10433 mRNA_2065 0.15 0.8
866,426 + 10433 mRNA_2065 0.16 -0.1
866,455 - 10433 mRNA_2065 0.19 -0.9
866,456 + 10433 mRNA_2065 0.19 -1.3
866,465 - 10433 mRNA_2065 0.19 -0.0
866,465 - 10433 mRNA_2065 0.19 -0.9
866,517 - 10433 mRNA_2065 0.24 0.3
866,697 - 10433 mRNA_2065 0.39 2.7
866,716 - 10433 mRNA_2065 0.41 -1.2
866,868 - 10433 mRNA_2065 0.54 0.9
866,876 - 10433 mRNA_2065 0.54 -0.5
867,206 - 10433 mRNA_2065 0.83 0.5
867,288 - 10433 mRNA_2065 0.90 2.3
867,319 - -1.0
867,385 + 0.2
867,431 - -0.8
867,466 - 1.6
867,479 - 4.0
867,486 + -0.1
867,486 + 0.6
867,488 - -1.1
867,574 - 0.2
867,583 - -0.5
867,596 - 0.3
867,619 + 0.4
867,639 - 1.3
867,944 - 10434 mRNA_2066 0.35 1.3
867,948 + 10434 mRNA_2066 0.35 1.5
867,991 - 10434 mRNA_2066 0.39 1.2
868,059 - 10434 mRNA_2066 0.46 1.3
868,066 + 10434 mRNA_2066 0.47 0.5
868,214 + 10434 mRNA_2066 0.62 1.5
868,253 - 10434 mRNA_2066 0.66 0.3
868,298 - 10434 mRNA_2066 0.71 -0.9
868,342 - 10434 mRNA_2066 0.75 0.4
868,390 - 10434 mRNA_2066 0.80 -0.0