Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2060

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2059: 10427 - K13509 AGPAT1_2 lysophosphatidate acyltransferase, at 853881 to 854956 10427 mRNA_2060: 10428 - K05824 LYS12 homoisocitrate dehydrogenase, at 855890 to 857453 10428 mRNA_2061: 10429 - HMMPfam-Protein of unknown function (DUF1640)-PF07798, at 857800 to 859276 10429

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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855,054 - -0.7
855,056 + -0.6
855,205 + -0.4
855,465 - 0.7
855,468 + -0.2
855,469 + -0.5
855,639 + -1.6
855,644 - -0.0
855,651 + 1.2
855,754 + -0.2
855,911 - -1.3
855,954 - 0.0
856,079 + 10428 mRNA_2060 0.12 -1.3
856,736 - 10428 mRNA_2060 0.54 -0.7
856,753 - 10428 mRNA_2060 0.55 0.4
857,044 + 10428 mRNA_2060 0.74 0.7
857,100 - 10428 mRNA_2060 0.77 -0.7
857,125 - 10428 mRNA_2060 0.79 0.2
857,222 + 10428 mRNA_2060 0.85 -0.4
857,368 - 0.3
857,393 - -0.4
857,528 - -0.7
857,667 - 0.7
857,813 - 0.2
857,815 + -1.7
857,831 + 1.3
858,388 + 10429 mRNA_2061 0.40 -0.3