Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2053

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2052: 10420 - KOG1399 Flavin-containing monooxygenase, at 838709 to 841749 10420 mRNA_2053: 10421 - KOG2450 Aldehyde dehydrogenase, at 842019 to 844467 10421 mRNA_2054: 10422 - KOG1994 Predicted RNA binding protein, contains G-patch and Zn-finger domains, at 844662 to 846096 10422

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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841,042 + 10420 mRNA_2052 0.77 1.1
841,219 - 10420 mRNA_2052 0.83 0.9
841,221 + 10420 mRNA_2052 0.83 2.1
841,411 - 10420 mRNA_2052 0.89 1.5
841,483 + -0.3
841,751 + -0.4
841,808 - 0.7
841,949 + -0.3
841,971 - 1.4
842,060 - -0.5
842,112 + 0.4
842,120 - 0.2
842,257 - 0.5
842,523 - 10421 mRNA_2053 0.21 -1.4
842,523 - 10421 mRNA_2053 0.21 1.8
842,669 - 10421 mRNA_2053 0.27 0.4
842,725 - 10421 mRNA_2053 0.29 1.8
842,786 - 10421 mRNA_2053 0.31 -0.2
842,808 - 10421 mRNA_2053 0.32 -0.5
842,944 - 10421 mRNA_2053 0.38 0.8
842,954 - 10421 mRNA_2053 0.38 0.4
842,968 - 10421 mRNA_2053 0.39 0.1
843,186 + 10421 mRNA_2053 0.48 -0.6
843,232 + 10421 mRNA_2053 0.50 -0.9
843,253 + 10421 mRNA_2053 0.50 -0.6
843,268 + 10421 mRNA_2053 0.51 0.4
843,372 - 10421 mRNA_2053 0.55 -0.4
843,389 - 10421 mRNA_2053 0.56 -2.6
843,442 + 10421 mRNA_2053 0.58 0.4
843,500 + 10421 mRNA_2053 0.60 -0.9
843,551 - 10421 mRNA_2053 0.63 1.5
843,602 + 10421 mRNA_2053 0.65 2.0
843,628 - 10421 mRNA_2053 0.66 -1.9
843,684 + 10421 mRNA_2053 0.68 0.4
843,718 - 10421 mRNA_2053 0.69 2.1
843,831 - 10421 mRNA_2053 0.74 1.7
843,880 - 10421 mRNA_2053 0.76 -1.2
843,892 + 10421 mRNA_2053 0.76 1.7
843,970 + 10421 mRNA_2053 0.80 0.5
843,995 + 10421 mRNA_2053 0.81 0.5
843,997 - 10421 mRNA_2053 0.81 0.6
844,178 + 10421 mRNA_2053 0.88 0.9
844,335 - 0.5
844,411 - 1.5
844,427 + 2.0
844,585 - 2.0
844,585 - 1.6
844,594 + -1.7
844,733 - 0.4
844,737 - 0.9
844,774 + 0.2
844,794 + 3.1
844,855 + 10422 mRNA_2054 0.13 0.4
844,990 + 10422 mRNA_2054 0.23 1.8
845,190 + 10422 mRNA_2054 0.37 0.9