Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2052

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2051: 10419 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 836699 to 837795 10419 mRNA_2052: 10420 - KOG1399 Flavin-containing monooxygenase, at 838709 to 841749 10420 mRNA_2053: 10421 - KOG2450 Aldehyde dehydrogenase, at 842019 to 844467 10421

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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837,827 - -0.5
837,959 - 0.4
838,000 - -0.1
838,130 + 1.5
838,279 - -0.3
838,309 + 1.0
838,414 + -0.7
838,483 + -2.2
838,535 - 0.2
838,538 + -0.3
838,568 - 2.2
838,569 + 0.1
838,570 + 1.3
838,571 + 0.2
838,571 + -0.4
838,572 + 1.2
838,579 + 0.7
838,580 + -0.2
838,583 + -1.8
838,587 + 0.7
838,595 + -0.3
838,596 + 2.4
838,597 + -1.9
838,760 + 1.5
838,909 + 0.0
839,087 + 10420 mRNA_2052 0.12 0.2
839,170 + 10420 mRNA_2052 0.15 -0.9
839,172 - 10420 mRNA_2052 0.15 1.5
839,326 + 10420 mRNA_2052 0.20 2.1
839,443 - 10420 mRNA_2052 0.24 -1.6
839,663 + 10420 mRNA_2052 0.31 0.5
839,686 - 10420 mRNA_2052 0.32 -1.0
839,693 + 10420 mRNA_2052 0.32 0.8
839,794 + 10420 mRNA_2052 0.36 0.7
840,073 + 10420 mRNA_2052 0.45 -1.9
840,229 - 10420 mRNA_2052 0.50 1.3
840,502 + 10420 mRNA_2052 0.59 0.1
840,564 - 10420 mRNA_2052 0.61 0.4
840,753 - 10420 mRNA_2052 0.67 0.3
840,789 - 10420 mRNA_2052 0.68 -0.1
840,791 + 10420 mRNA_2052 0.68 1.8
841,042 + 10420 mRNA_2052 0.77 1.1
841,219 - 10420 mRNA_2052 0.83 0.9
841,221 + 10420 mRNA_2052 0.83 2.1
841,411 - 10420 mRNA_2052 0.89 1.5
841,483 + -0.3
841,751 + -0.4
841,808 - 0.7
841,949 + -0.3
841,971 - 1.4
842,060 - -0.5
842,112 + 0.4
842,120 - 0.2
842,257 - 0.5
842,523 - 10421 mRNA_2053 0.21 -1.4
842,523 - 10421 mRNA_2053 0.21 1.8
842,669 - 10421 mRNA_2053 0.27 0.4
842,725 - 10421 mRNA_2053 0.29 1.8