Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2036

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2035: 10403 - K14824 ERB1, BOP1 ribosome biogenesis protein ERB1, at 801171 to 804014 10403 mRNA_2036: 10404 - HMMPfam-Alpha and gamma adaptin binding protein p34-PF10199, at 804134 to 805617 10404 mRNA_2037: 10405 - Hypothetical Protein, at 806389 to 807325 10405

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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804,209 + 1.9
804,368 - 10404 mRNA_2036 0.16 -2.7
804,563 + 10404 mRNA_2036 0.29 0.8
804,695 + 10404 mRNA_2036 0.38 -2.2
804,856 + 10404 mRNA_2036 0.49 1.6
804,863 + 10404 mRNA_2036 0.49 0.2
805,257 - 10404 mRNA_2036 0.76 -2.2
805,279 + 10404 mRNA_2036 0.77 0.7
805,799 + 0.9
806,109 - -0.7
806,122 - 0.8
806,129 + 0.1
806,251 - -0.1
806,259 - -0.1
806,358 - -1.3
806,366 + -0.3
806,403 + 1.0
806,482 + -0.3
806,531 + 10405 mRNA_2037 0.15 0.5
806,595 - 10405 mRNA_2037 0.22 1.2
806,596 - 10405 mRNA_2037 0.22 -0.2
806,600 + 10405 mRNA_2037 0.23 -0.7
806,613 + 10405 mRNA_2037 0.24 1.4