Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2028

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2027: 10395 - K07208 RHEB Ras homolog enriched in brain, at 780264 to 781182 10395 mRNA_2028: 10396 - HMMPfam-TENA/THI-4/PQQC family-PF03070,SUPERFAMILY--SSF48613, at 782141 to 783596 10396

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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781,229 + -3.3
781,478 + 0.0
781,493 + 0.1
781,503 + -0.2
781,520 + 1.5
781,678 + -0.1
781,768 - 0.4
781,791 - 0.3
781,807 - 0.2
781,811 + -0.5
781,900 - 1.0
781,917 - 0.2
781,927 + 3.6
781,932 - 0.6
781,936 + 1.7
782,075 - -1.6
782,082 + -0.9
782,084 + 0.7
782,085 - 0.5
782,085 - -2.0
782,086 - 2.1
782,092 + 1.0
782,096 + -0.3
782,097 + 2.0
782,123 + -0.4
782,124 - 1.0
782,212 - -1.8
782,214 + 0.8
782,238 + -2.1
782,238 - -0.3
782,248 + 0.6
782,256 + -0.2
782,262 + 1.0
782,277 + -0.2
782,369 - 10396 mRNA_2028 0.16 -2.2
782,381 + 10396 mRNA_2028 0.16 -0.5
782,391 + 10396 mRNA_2028 0.17 -0.6
782,395 + 10396 mRNA_2028 0.17 -0.2
782,400 - 10396 mRNA_2028 0.18 0.8
782,437 + 10396 mRNA_2028 0.20 0.3
782,439 + 10396 mRNA_2028 0.20 -0.7
782,571 - 10396 mRNA_2028 0.30 0.5
782,694 - 10396 mRNA_2028 0.38 -0.4
782,803 - 10396 mRNA_2028 0.45 -0.0
783,399 - 10396 mRNA_2028 0.86 0.8
783,439 + 10396 mRNA_2028 0.89 0.5
783,695 + 3.0
783,833 - 2.8
783,854 + 0.1
783,858 - 1.7
783,914 + -1.2
784,091 + -0.0
784,114 - -2.2
784,147 - -0.3
784,181 - 0.0
784,187 + 0.2
784,201 + 0.2
784,309 - 1.3
784,318 - 1.0
784,335 + 2.0
784,339 + -0.6
784,493 - -1.5
784,508 - 0.4
784,526 + -0.1
784,546 - 1.0
784,574 + 0.6