Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2022

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2021: 10389 - BLAST deacetylase-like protein [Drechmeria coniospora], at 765421 to 766356 10389 mRNA_2022: 10390 - BLAST KLLA0F09339p [Kluyveromyces lactis], at 766628 to 767371 10390 mRNA_2023: 10391 - K04718 SPHK sphingosine kinase, at 767575 to 770006 10391

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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765,699 - 10389 mRNA_2021 0.30 0.7
766,253 - 10389 mRNA_2021 0.89 1.2
766,278 - -0.3
766,308 + 0.7
766,399 - -1.1
766,399 + 1.1
766,400 - 1.7
766,402 - -0.4
766,545 - -0.3
766,710 - 10390 mRNA_2022 0.11 0.5
766,725 - 10390 mRNA_2022 0.13 0.3
766,731 + 10390 mRNA_2022 0.14 1.4
766,850 + 10390 mRNA_2022 0.30 -0.7
766,988 - 10390 mRNA_2022 0.48 -0.3
767,181 - 10390 mRNA_2022 0.74 -0.8
767,274 + 10390 mRNA_2022 0.87 0.3
767,415 - -0.9
767,538 - 0.2
767,710 - 1.4
767,753 + 0.3
768,148 + 10391 mRNA_2023 0.24 0.1